Hg_chrom3_TN10mRNA_4832
Organism: Heterodera glycines Gene Locus: chr3:2433976-2436066 Feature type: polypeptideProtein Sequence
Length: 197
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.417 | 1.889 | 0.738 | 0.875 | 1.692 | 0.521 | 0.242 | 0.254 | 1.918 | 1.372 | 1.692 | 0.896 | 0.987 | 0.293 | 0.932 | 1.16 | 0.333 | 0.461 | 0.781 | 0.896 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4577
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.688
|
0.397
|
0.081
|
0.550
|
0.102
|
0.102
|
0.216
|
0.047
|
0.255
|
0.190
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003506
|
2.000
|
1.000
|
Hsc_gene_24883.t1
|
— | — |
P93784.1 14-3-3-like protein 16R [Solanum tuberosum]
|
KAJ1679459.1 14-3-3 protein [Spiromyces aspiralis]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.865|GO:0005575_0.835|GO:0110165_0.824|GO:0005622_0.757|GO:0009987_0.734|GO:0043226_0.692|GO:0016020_0.689|GO:0065007_0.673|GO:0005737_0.635|GO:0050789_0.632|GO:0043229_0.616|GO:0043227_0.589|GO:0003674_0.563|GO:0043231_0.536|GO:0005488_0.524
|
IPR000308+7-195_57-81_120-146_147-173+|IPR023410+1-195_2-197+|IPR036815+1-196_1-197+
|
SM00101+2-197+
|
PF00244+1-195+14-3-3_protein
|
— |
PTHR18860+7-195+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-197
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
22317.680
|
8.316
|
3.500
|
30.457
|
8.122
|
50.761
|
49.239
|
16.244
|
14.213
|
43.655
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
67.023
|
0.231
|
0.444
|
2.441
|
0.852
|
0.985
|
0.806
|
0.280
|
2.764
|
288.888
|
166.263
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.269
|
2.587
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.