Hg_chrom3_TN10mRNA_4837
Organism: Heterodera glycines Gene Locus: chr3:2457192-2466577 Feature type: polypeptideProtein Sequence
Length: 906
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.194 | 1.078 | 0.622 | 0.457 | 0.736 | 2.462 | 0.788 | 2.539 | 0.589 | 1.208 | 0.786 | 0.974 | 1.012 | 1.465 | 1.014 | 1.403 | 0.633 | 0.686 | 0.17 | 0.454 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4581
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.728
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKSFISRPEASFSKNKKN
|
— | — |
79-124
|
0.995
|
— | — |
0.000
|
— | — |
0.588
|
0.287
|
0.033
|
0.684
|
0.072
|
0.046
|
0.084
|
0.065
|
0.081
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003507
|
2.000
|
1.000
|
Hsc_gene_22257.t1
|
— | — | — |
KAH7728934.1 double-stranded RNA binding domain-containing protein family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.871|GO:0005575_0.863|GO:0110165_0.863|GO:0009987_0.829|GO:0016020_0.797|GO:0065007_0.728|GO:0050789_0.720|GO:0003674_0.703|GO:0005488_0.693|GO:0005622_0.666|GO:0043226_0.627|GO:0043229_0.614|GO:0050794_0.574|GO:0043227_0.570|GO:0043231_0.546|GO:0097159_0.525|GO:0003676_0.518|GO:0032502_0.504|GO:0048856_0.504
|
IPR014720+203-271_204-267_204-270_492-571_726-823_727-822_728-818+|IPR051740+120-273+
|
SM00358+204-270_492-571_727-822+
|
PF00035+204-267_728-818+Double-stranded_RNA_binding_motif
|
— |
PTHR46054+120-273+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-219;261-315;405-809
|
3.000
|
220-260;316-404;810-906
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.940
|
98739.800
|
9.775
|
44.000
|
23.068
|
10.486
|
50.993
|
49.007
|
15.232
|
7.837
|
52.097
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1682.707
|
3055.483
|
1517.623
|
1074.194
|
631.864
|
923.925
|
882.659
|
786.501
|
1454.813
|
2943.640
|
2305.571
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.238
|
-1.645
|
-0.391
|
-0.797
|
0.563
|
— |
-0.335
|
0.306
|
— | — | — | — | — |
No JSON data available for plots.