Hg_chrom3_TN10mRNA_4838
Organism: Heterodera glycines Gene Locus: chr3:2477641-2480248 Feature type: polypeptideProtein Sequence
Length: 317
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.734 | 0.954 | 0.86 | 1.197 | 0.841 | 0.647 | 0.338 | 1.104 | 2.033 | 1.322 | 0.86 | 2.412 | 1.84 | 0.789 | 1.996 | 0.586 | 0.672 | 1.004 | 0.971 | 1.021 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4582
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.927
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum
|
— |
RKHYLRITSMRMTRR
|
57-88
|
0.991
|
— | — | — | — |
0.002
|
— | — |
0.204
|
0.194
|
0.103
|
0.365
|
0.639
|
0.448
|
0.226
|
0.019
|
0.672
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_4530.t1
|
— | — |
KAF7635580.1 DC_STAMP domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.952|GO:0009987_0.893|GO:0071840_0.736|GO:0016043_0.732|GO:0022414_0.693|GO:0061024_0.692|GO:0019953_0.684|GO:0048609_0.680|GO:0061025_0.679|GO:0010256_0.676|GO:0022412_0.675|GO:0007009_0.674|GO:0007338_0.670|GO:0007342_0.670|GO:0008037_0.670|GO:0009566_0.670|GO:0009988_0.670|GO:0035036_0.670|GO:0045026_0.670
|
IPR012858+26-217+|IPR051856+2-302+
|
— |
PF07782+26-217+DC-STAMP-like_protein
|
— |
PTHR21041+2-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-317
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
37413.340
|
9.907
|
21.500
|
27.445
|
13.565
|
42.271
|
57.729
|
17.666
|
9.779
|
40.379
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
25.786
|
23.957
|
24.539
|
30.601
|
44.958
|
38.431
|
48.743
|
25.128
|
18.336
|
10.428
|
13.817
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.523
|
— | — |
-0.719
|
1.104
|
— | — | — | — | — |
No JSON data available for plots.