SCN Proteipedia

Hg_chrom3_TN10mRNA_4841

Organism: Heterodera glycines Gene Locus: chr3:2484561-2485748 Feature type: polypeptide

Protein Sequence

Length: 123

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.229	0.945	1.33	0.841	0.813	0.625	0.581	1.22	1.987	0.769	0.862	0.478	2.258	0.469	1.493	1.045	0.4	1.232	0.625	0.956	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4584	—	—	1.111	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	0.989

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.703	0.203	0.087	0.423	0.040	0.055	0.022	0.025	0.073	0.079

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000791	5.000	1.000	Hsc_gene_4531.t1	Hsc_gene_4531.t1	—	Q6NRE8.1 Histone-lysine N-methyltransferase SUV39H1 [Xenopus laevis]	KAI1710259.1 SET domain-containing protein [Ditylenchus destructor]	No	-0.100

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.882\|GO:0005575_0.821\|GO:0110165_0.810\|GO:0009987_0.809\|GO:0003674_0.794\|GO:0005622_0.711\|GO:0071840_0.684\|GO:0003824_0.683\|GO:0016043_0.678\|GO:0008152_0.663\|GO:0016740_0.661\|GO:0016020_0.657\|GO:0043226_0.651\|GO:0008168_0.650\|GO:0016741_0.650\|GO:0006325_0.645\|GO:0006338_0.645\|GO:0043170_0.633\|GO:0140096_0.631\|GO:0065007_0.630\|GO:0043229_0.627\|GO:0008276_0.625\|GO:0042054_0.625\|GO:0140938_0.625\|GO:0140993_0.625\|GO:0050789_0.615\|GO:0050794_0.603\|GO:0008170_0.599\|GO:0008757_0.599\|GO:0016278_0.599\|GO:0016279_0.599\|GO:0044237_0.599\|GO:0009058_0.595\|GO:0044249_0.584\|GO:0009059_0.574\|GO:0043227_0.570\|GO:0043231_0.570\|GO:0010467_0.564\|GO:0019222_0.560\|GO:0031323_0.556\|GO:0005488_0.555\|GO:0060255_0.555\|GO:0009889_0.549\|GO:0010468_0.549\|GO:0010556_0.549\|GO:0031326_0.549\|GO:0048519_0.537\|GO:0048523_0.531\|GO:0009892_0.519\|GO:0010605_0.518\|GO:0031324_0.517\|GO:0009890_0.516\|GO:0010558_0.516\|GO:0031327_0.516	IPR001214+1-69_7-75_10-68+\|IPR046341+2-85_9-70+\|IPR051357+5-83+	SM00317+7-75+	PF00856+10-68+SET_domain	—	PTHR45660+5-83+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-123	6p0r_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.628	13921.940	7.775	2.500	27.642	14.634	43.902	56.098	15.447	12.195	49.593

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	lightgreen	23.517	25.014	11.543	20.781	24.681	12.264	61.177	41.618	5.293	25.011	16.560

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.349	—	0.960	—	-0.994	2.328	1.664	0.697	—	—	—	—	—

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