Hg_chrom3_TN10mRNA_4844
Organism: Heterodera glycines Gene Locus: chr3:2501037-2503620 Feature type: polypeptideProtein Sequence
Length: 205
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.454 | 0.567 | 1.774 | 0.336 | 1.463 | 1.876 | 0.581 | 0.976 | 1.626 | 1.121 | 0.961 | 2.296 | 2.304 | 0.563 | 1.294 | 0.836 | 0.56 | 0.739 | 0.375 | 0.574 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4587
|
— | — |
1.667
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
4.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cell_membrane
|
— | — |
34-56
|
0.964
|
— | — | — | — |
0.000
|
— | — |
0.366
|
0.286
|
0.023
|
0.394
|
0.255
|
0.405
|
0.305
|
0.007
|
0.679
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007445
|
1.000
|
1.000
|
Hsc_gene_22212.t1
|
Hsc_gene_22212.t1
|
— |
Q9Z309.1 Calcium and integrin-binding family member 2 [Mus musculus]
|
KAK5965398.1 Calcium and integrin-binding protein 1 [Trichostrongylus colubriformis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0008150_0.749|GO:0005575_0.727|GO:0110165_0.705|GO:0005622_0.685|GO:0005737_0.603|GO:0003674_0.600|GO:0005488_0.545|GO:0016020_0.525|GO:0009987_0.506
|
IPR002048+82-117_86-114_119-154_123-151_123-187_123-191_162-197_166-194+|IPR011992+20-203+|IPR018247+132-144_175-187+|IPR051433+21-205+
|
SM00054+86-114_123-151_166-194+
|
PF13499+123-191+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000079+23-205+Calcium_and_integrin-binding_family_member_2
|
PTHR45791+21-205+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-205
|
8tkp_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
24065.300
|
4.579
|
-10.000
|
33.171
|
12.683
|
52.195
|
47.805
|
14.634
|
18.537
|
39.024
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
117.665
|
156.603
|
119.788
|
100.432
|
102.186
|
121.239
|
40.138
|
214.268
|
6.168
|
189.662
|
111.021
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.617
|
-0.778
|
— | — | — |
-1.583
|
0.715
|
-2.272
|
— | — | — | — | — |
No JSON data available for plots.