Hg_chrom3_TN10mRNA_4845
Organism: Heterodera glycines Gene Locus: chr3:2520947-2524497 Feature type: polypeptideProtein Sequence
Length: 265
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.097 | 0.614 | 0.823 | 0.651 | 0.943 | 1.451 | 1.168 | 1.887 | 0.335 | 1.479 | 0.229 | 1.998 | 1.153 | 1.669 | 1.54 | 0.701 | 0.742 | 1.086 | 0.29 | 0.555 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4588
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
93-117
|
0.996
|
— | — |
0.000
|
— | — |
0.731
|
0.409
|
0.028
|
0.412
|
0.189
|
0.120
|
0.050
|
0.013
|
0.173
|
0.506
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001929
|
2.000
|
2.000
|
Hsc_gene_22223.t1;Hsc_gene_22223.t2
|
— | — |
A2RAF6.1 Lon protease homolog 2, peroxisomal [Aspergillus niger CBS 513.88]
|
MDT8375687.1 endopeptidase La [Mariprofundaceae bacterium]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0030163
|
GO:0005575_0.818|GO:0110165_0.809|GO:0008150_0.799|GO:0005622_0.726|GO:0016020_0.690|GO:0005737_0.685|GO:0043226_0.635|GO:0043229_0.625|GO:0043227_0.608|GO:0008152_0.603|GO:0043231_0.602|GO:0044238_0.573|GO:0003674_0.572|GO:0043170_0.538|GO:0009987_0.531|GO:0019538_0.513
|
IPR008269+162-236+|IPR013087+12-41_12-46_50-73_50-78+|IPR014721+84-264+|IPR020568+96-259+|IPR027065+160-260+
|
SM00355+12-41_50-73+
|
PF05362+162-236+Lon_protease_(S16)_C-terminal_proteolytic_domain
|
— |
PTHR10046+160-260+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;248-265
|
1.000
|
8-247
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
28838.880
|
6.820
|
2.000
|
23.019
|
10.189
|
40.755
|
59.245
|
12.830
|
10.189
|
53.585
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
red
|
9.710
|
2.292
|
3.167
|
9.684
|
9.436
|
5.272
|
5.887
|
2.505
|
0.000
|
28.142
|
16.081
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.940
|
1.716
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.