Hg_chrom3_TN10mRNA_4847
Organism: Heterodera glycines Gene Locus: chr3:2524738-2533722 Feature type: polypeptideProtein Sequence
Length: 809
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.107 | 0.517 | 0.877 | 0.554 | 1.009 | 1.141 | 1.001 | 0.865 | 1.401 | 1.336 | 1.199 | 1.6 | 0.858 | 0.975 | 1.085 | 0.918 | 0.75 | 1.18 | 0.19 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4589
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.805
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRRK,KKSGAGIYTYSAEGGKKSK
|
4-24
|
0.999
|
27-49
|
0.994
|
— | — |
0.000
|
— | — |
0.104
|
0.947
|
0.050
|
0.245
|
0.121
|
0.142
|
0.130
|
0.031
|
0.075
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000297
|
4.000
|
5.000
|
Hsc_gene_22204.t1;Hsc_gene_22204.t2;Hsc_gene_22217.t1;Hsc_gene_22222.t1;Hsc_gene_295.t1
|
Hsc_gene_22216.t1;Hsc_gene_22217.t1;Hsc_gene_22222.t1;Hsc_gene_296.t1
|
— |
Q64428.2 Trifunctional enzyme subunit alpha, mitochondrial [Rattus norvegicus]
|
KAH7728307.1 trifunctional enzyme subunit alpha [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0003857|GO:0004300|GO:0005739|GO:0006631|GO:0006635|GO:0016491|GO:0016507|GO:0016616|GO:0070403
|
GO:0008150_0.902|GO:0003674_0.842|GO:0009987_0.841|GO:0005575_0.799|GO:0008152_0.774|GO:0044237_0.739|GO:0003824_0.735|GO:0110165_0.719|GO:0044238_0.709|GO:0044281_0.677|GO:0005622_0.652|GO:0006082_0.650|GO:0019752_0.650|GO:0043436_0.650|GO:0016020_0.633|GO:0032787_0.628|GO:0009056_0.625|GO:0044248_0.608|GO:0006629_0.607|GO:0044282_0.604|GO:0016054_0.602|GO:0044255_0.602|GO:0046395_0.602|GO:0005737_0.601|GO:0006631_0.600|GO:0043226_0.594|GO:0072329_0.589|GO:0043229_0.580|GO:0016042_0.563|GO:0009062_0.562|GO:0044242_0.562|GO:0006635_0.558|GO:0019395_0.558|GO:0030258_0.558|GO:0034440_0.558|GO:0043227_0.540|GO:0043231_0.525|GO:0016491_0.520
|
IPR001753+81-256+|IPR006108+586-681_721-804+|IPR006176+405-583+|IPR008927+585-700_721-807+|IPR012803+79-807+|IPR018376+172-192+|IPR029045+72-389+|IPR036291+402-585+|IPR050136+59-808+
|
— |
PF00378+81-256+Enoyl-CoA_hydratase/isomerase|PF00725+586-681_721-804+3-hydroxyacyl-CoA_dehydrogenase,_C-terminal_domain|PF02737+405-583+3-hydroxyacyl-CoA_dehydrogenase,_NAD_binding_domain
|
G3DSA:1.10.1040.50:FF:000002+587-802+Trifunctional_enzyme_subunit_alpha,_mitochondrial|G3DSA:3.40.50.720:FF:000009+402-588+Fatty_oxidation_complex,_alpha_subunit|G3DSA:3.90.226.10:FF:000011+70-400+Fatty_acid_oxidation_complex_subunit_alpha
|
PTHR43612+59-808+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-809
|
3pea_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
87737.980
|
9.507
|
26.000
|
25.834
|
6.922
|
43.511
|
56.489
|
14.957
|
10.878
|
50.433
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1763.427
|
1173.498
|
3020.867
|
1338.365
|
1901.976
|
2111.450
|
2395.924
|
3719.223
|
846.670
|
1207.003
|
1052.575
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.136
|
— |
-1.067
|
0.475
|
0.165
|
0.194
|
0.714
|
-0.492
|
— | — | — | — | — |
No JSON data available for plots.