Hg_chrom3_TN10mRNA_4848
Organism: Heterodera glycines Gene Locus: chr3:2547881-2556637 Feature type: polypeptideProtein Sequence
Length: 802
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.131 | 0.522 | 0.884 | 0.559 | 1.018 | 1.151 | 1.009 | 0.935 | 1.385 | 1.314 | 1.19 | 1.614 | 0.831 | 0.935 | 1.094 | 0.926 | 0.756 | 1.152 | 0.192 | 0.55 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4590
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.338
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRRK,KKSGAGIYTYSAEGGKKSK
|
4-24
|
0.999
|
27-49
|
0.994
|
— | — |
0.000
|
— | — |
0.102
|
0.949
|
0.052
|
0.234
|
0.122
|
0.141
|
0.127
|
0.031
|
0.076
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000297
|
4.000
|
5.000
|
Hsc_gene_22204.t1;Hsc_gene_22204.t2;Hsc_gene_22217.t1;Hsc_gene_22222.t1;Hsc_gene_295.t1
|
Hsc_gene_22216.t1;Hsc_gene_22217.t1;Hsc_gene_22222.t1;Hsc_gene_296.t1
|
— |
Q64428.2 Trifunctional enzyme subunit alpha, mitochondrial [Rattus norvegicus]
|
KAH7728307.1 trifunctional enzyme subunit alpha [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0003857|GO:0004300|GO:0005739|GO:0006631|GO:0006635|GO:0016491|GO:0016507|GO:0016616|GO:0070403
|
GO:0008150_0.903|GO:0003674_0.842|GO:0009987_0.841|GO:0005575_0.798|GO:0008152_0.772|GO:0044237_0.738|GO:0003824_0.730|GO:0110165_0.718|GO:0044238_0.708|GO:0044281_0.675|GO:0005622_0.651|GO:0006082_0.649|GO:0019752_0.649|GO:0043436_0.649|GO:0016020_0.632|GO:0032787_0.628|GO:0009056_0.626|GO:0044248_0.608|GO:0006629_0.607|GO:0044282_0.604|GO:0016054_0.602|GO:0044255_0.602|GO:0046395_0.602|GO:0006631_0.600|GO:0005737_0.597|GO:0043226_0.594|GO:0072329_0.589|GO:0043229_0.577|GO:0016042_0.564|GO:0044242_0.563|GO:0009062_0.562|GO:0006635_0.559|GO:0019395_0.559|GO:0030258_0.559|GO:0034440_0.559|GO:0043227_0.537|GO:0043231_0.521|GO:0016491_0.519
|
IPR001753+81-256+|IPR006108+579-674_714-797+|IPR006176+398-576+|IPR008927+578-693_714-800+|IPR012803+74-800+|IPR018376+172-192+|IPR029045+72-387+|IPR036291+395-578+|IPR050136+58-801+
|
— |
PF00378+81-256+Enoyl-CoA_hydratase/isomerase|PF00725+579-674_714-797+3-hydroxyacyl-CoA_dehydrogenase,_C-terminal_domain|PF02737+398-576+3-hydroxyacyl-CoA_dehydrogenase,_NAD_binding_domain
|
G3DSA:1.10.1040.50:FF:000002+580-795+Trifunctional_enzyme_subunit_alpha,_mitochondrial|G3DSA:3.40.50.720:FF:000009+395-581+Fatty_oxidation_complex,_alpha_subunit|G3DSA:3.90.226.10:FF:000011+70-393+Fatty_acid_oxidation_complex_subunit_alpha
|
PTHR43612+58-801+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-802
|
6lvp_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
86938.870
|
9.440
|
25.500
|
26.060
|
6.983
|
43.890
|
56.110
|
15.087
|
10.973
|
50.499
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1739.978
|
1257.628
|
3085.334
|
1532.987
|
1952.325
|
2082.184
|
2049.547
|
2955.009
|
1603.413
|
816.715
|
1153.871
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.066
|
0.149
|
-0.901
|
0.317
|
— | — |
0.402
|
-0.387
|
— | — | — | — | — |
No JSON data available for plots.