Hg_chrom3_TN10mRNA_4850
Organism: Heterodera glycines Gene Locus: chr3:2567670-2570231 Feature type: polypeptideProtein Sequence
Length: 277
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.882 | 1.175 | 1.05 | 0.249 | 0.903 | 0.741 | 0.817 | 0.542 | 1.925 | 1.707 | 1.203 | 1.274 | 1.003 | 0.486 | 0.884 | 0.928 | 0.947 | 1.258 | 0.278 | 0.531 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4592
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-18
|
0.974
|
1.000
|
0.000
|
0.000
|
0.377
|
0.418
|
0.119
|
0.505
|
0.210
|
0.259
|
0.153
|
0.061
|
0.249
|
0.254
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007446
|
1.000
|
1.000
|
Hsc_gene_7009.t1
|
Hsc_gene_22233.t1
|
— |
Q9X248.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG [Thermotoga maritima MSB8]
|
KAI1709692.1 enoyl-(Acyl carrier protein) reductase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.742|GO:0005575_0.695|GO:0110165_0.689|GO:0003674_0.680|GO:0016020_0.577|GO:0005622_0.567|GO:0003824_0.548|GO:0009987_0.543|GO:0005737_0.536|GO:0008152_0.523
|
IPR002347+30-47_108-119_155-171_161-169_181-200_202-219_238-258+|IPR020904+168-196+|IPR036291+28-276+
|
— |
PF13561+37-274+Enoyl-(Acyl_carrier_protein)_reductase
|
G3DSA:3.40.50.720:FF:000084+16-277+Short-chain_dehydrogenase_reductase
|
PTHR43975+26-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-277
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
30389.460
|
8.920
|
4.500
|
24.549
|
6.859
|
44.765
|
55.235
|
13.357
|
11.191
|
49.097
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
2299.300
|
85.739
|
2460.412
|
1039.840
|
182.614
|
15.547
|
33.901
|
96.775
|
11261.662
|
145.132
|
4909.359
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.613
|
3.462
|
-1.134
|
-2.542
|
-3.539
|
1.135
|
2.556
|
-1.380
|
6.136
|
-3.249
|
— | — |
6.698
|