Hg_chrom3_TN10mRNA_4852
Organism: Heterodera glycines Gene Locus: chr3:2615436-2618677 Feature type: polypeptideProtein Sequence
Length: 281
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.283 | 1.076 | 0.518 | 0.245 | 0.712 | 1.186 | 0.763 | 0.712 | 0.791 | 1.395 | 0.485 | 1.047 | 2.274 | 1.095 | 2.469 | 0.712 | 0.583 | 1.294 | 0.547 | 0.419 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4594
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion|peroxisome
|
— |
RHRR,AAAED,RRRKRELDNERKIIWRKAGAQTPAPKRAAK
|
26-46
|
0.934
|
— | — | — | — |
0.000
|
— | — |
0.192
|
0.641
|
0.253
|
0.227
|
0.608
|
0.299
|
0.316
|
0.821
|
0.307
|
0.155
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007447
|
1.000
|
1.000
|
Hsc_gene_1794.t1
|
— | — |
Q6P4T0.2 Autophagy-related protein 2 homolog A [Mus musculus]
|
KAI1732177.1 autophagy-related protein 2 like protein B [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006914
|
GO:0008150_0.918|GO:0009987_0.872|GO:0003674_0.849|GO:0051179_0.734|GO:0006810_0.732|GO:0051234_0.732|GO:0071840_0.710|GO:0016043_0.705|GO:0033036_0.681|GO:0061024_0.679|GO:0010876_0.675|GO:0006869_0.670|GO:0120009_0.670|GO:0005215_0.666|GO:0005319_0.650|GO:0120013_0.650|GO:0005575_0.638|GO:0110165_0.635
|
IPR026849+12-153+
|
— | — | — |
PTHR13190+12-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-281
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
31728.890
|
11.962
|
25.000
|
23.843
|
11.744
|
41.637
|
58.363
|
16.726
|
7.117
|
48.399
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
68.051
|
25.319
|
34.323
|
22.652
|
29.868
|
20.975
|
44.357
|
53.019
|
4.146
|
208.170
|
120.731
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.492
|
— | — |
1.093
|
1.225
|
— |
-5.819
|
— | — | — | — |
No JSON data available for plots.