Hg_chrom3_TN10mRNA_4857
Organism: Heterodera glycines Gene Locus: chr3:2645386-2646861 Feature type: polypeptideProtein Sequence
Length: 165
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 0.987 | 0.992 | 0.418 | 0.808 | 0.932 | 0.722 | 1.818 | 1.347 | 0.737 | 1.194 | 1.783 | 0.842 | 0.466 | 2.721 | 1.212 | 0.994 | 0.826 | 0.932 | 0.357 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4599
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.821
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
RRKTSAGRQRHRLRPR,KKGKRGEFWGFWRGGRTRR,KGKRGEFWGFWRGGRTRRSIRRLMRSVRTSIRRKTSAGRQRHRLRP
|
36-56
|
1.000
|
1-53
|
0.919
|
— | — |
0.008
|
— | — |
0.247
|
0.328
|
0.028
|
0.522
|
0.197
|
0.201
|
0.136
|
0.079
|
0.663
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007448
|
1.000
|
1.000
|
Hsc_gene_16582.t1
|
Hsc_gene_16582.t1
|
— | — |
KAI3418045.1 hypothetical protein GPALN_010634 [Globodera pallida]
|
RLN78576
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
85-165
|
1.000
|
1-84
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
18960.680
|
11.528
|
21.000
|
35.152
|
9.091
|
57.576
|
42.424
|
24.848
|
10.303
|
46.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
134.490
|
16.340
|
18.921
|
6.010
|
3.535
|
3.505
|
21.303
|
18.733
|
3.278
|
552.804
|
317.293
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.581
|
-1.552
|
— | — |
2.613
|
2.313
|
— |
-7.568
|
— |
-7.160
|
— | — |
No JSON data available for plots.