Hg_chrom3_TN10mRNA_4858
Organism: Heterodera glycines Gene Locus: chr3:2650421-2652958 Feature type: polypeptideProtein Sequence
Length: 321
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.666 | 2.97 | 0.396 | 0.322 | 0.208 | 0.16 | 4.821 | 0.467 | 0.277 | 0.126 | 0.472 | 0.367 | 0.346 | 0.539 | 1.272 | 0.267 | 0.204 | 0.944 | 0.479 | 0.092 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4600
|
— | — |
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
— | — |
1.000
|
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.546
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RGRVGGFGGSGGGFRWRGAAGGRGVGGVGGRGGFGRRGGGGGHGVPRNSIPGAGGGRGGGGGGAGRGGDGGEGRTKRKNAAGVKKGWKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.709
|
0.160
|
0.030
|
0.496
|
0.070
|
0.011
|
0.019
|
0.004
|
0.271
|
0.462
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003508
|
2.000
|
1.000
|
Hsc_gene_1418.t1
|
— | — | — | — |
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-321
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
28049.720
|
11.979
|
20.500
|
13.707
|
3.115
|
30.218
|
69.782
|
10.280
|
3.427
|
82.866
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
200.842
|
465.245
|
362.610
|
232.648
|
66.876
|
40.508
|
5.472
|
87.403
|
7.584
|
400.208
|
231.941
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.590
|
-1.137
|
-0.530
|
-1.830
|
-0.709
|
-2.880
|
1.008
|
-3.858
|
-5.844
|
5.156
|
— | — | — |
No JSON data available for plots.