Hg_chrom3_TN10mRNA_4867
Organism: Heterodera glycines Gene Locus: chr3:2692512-2700208 Feature type: polypeptideProtein Sequence
Length: 742
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.674 | 1.598 | 0.809 | 0.929 | 0.876 | 1.279 | 0.738 | 1.146 | 1.378 | 1.257 | 1.205 | 2.22 | 1.722 | 0.726 | 0.798 | 1.02 | 0.729 | 0.776 | 1.14 | 0.634 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4609
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.849
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.284
|
0.313
|
0.032
|
0.390
|
0.421
|
0.143
|
0.209
|
0.021
|
0.319
|
0.273
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000197
|
1.000
|
10.000
|
Hsc_gene_1872.t1;Hsc_gene_18949.t1;Hsc_gene_18949.t2;Hsc_gene_22248.t1;Hsc_gene_22248.t2;Hsc_gene_22248.t3;Hsc_gene_22255.t1;Hsc_gene_22255.t2;Hsc_gene_2940.t1;Hsc_gene_2940.t2
|
— | — | — |
KAI3419387.1 Beta-1,3-galactosyltransferase 2 [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR012444+489-612+|IPR029044+529-712_530-688+
|
— |
PF07801+489-612+Protein_of_unknown_function_(DUF1647)
|
— |
PTHR31389+253-725+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
742-742
|
1.000
|
1-741
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
84132.160
|
8.834
|
24.500
|
23.854
|
12.129
|
47.305
|
52.695
|
14.151
|
9.704
|
46.496
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
40.053
|
9.017
|
21.693
|
15.368
|
14.379
|
67.062
|
41.710
|
120.692
|
0.000
|
66.514
|
38.008
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.038
|
— | — | — |
2.241
|
-0.684
|
0.741
|
-1.397
|
-6.791
|
4.799
|
— | — | — |
No JSON data available for plots.