Hg_chrom3_TN10mRNA_4873
Organism: Heterodera glycines Gene Locus: chr3:2720017-2725364 Feature type: polypeptideProtein Sequence
Length: 604
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.635 | 1.425 | 0.753 | 0.856 | 1.104 | 1.443 | 0.749 | 0.911 | 1.435 | 1.163 | 1.204 | 1.363 | 2.07 | 0.891 | 0.777 | 1.088 | 0.624 | 0.727 | 0.891 | 0.828 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4614
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.918
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-27
|
0.935
|
0.645
|
0.000
|
0.000
|
0.316
|
0.233
|
0.033
|
0.446
|
0.444
|
0.115
|
0.300
|
0.045
|
0.322
|
0.464
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007451
|
2.000
|
0.000
|
0.000
|
Hsc_gene_22237.t1
|
— |
P91200.1 Galactoside 2-alpha-L-fucosyltransferase [Caenorhabditis elegans]
|
KAI1695830.1 galactoside 2-alpha-L-fucosyltransferase [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0008107|GO:0016020
|
GO:0008150_0.958|GO:0009987_0.602|GO:0065007_0.564|GO:0050789_0.548|GO:0050794_0.531|GO:0050896_0.518
|
IPR002516+400-594+|IPR052501+314-597+
|
— |
PF01531+400-594+Glycosyl_transferase_family_11
|
— |
PTHR22898+314-597+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-604
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
68711.770
|
8.205
|
11.500
|
24.338
|
13.245
|
47.517
|
52.483
|
13.576
|
10.762
|
45.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
204.790
|
29.296
|
72.951
|
60.712
|
36.292
|
248.732
|
130.267
|
286.007
|
5.529
|
567.713
|
326.777
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.088
|
0.914
|
— |
-0.776
|
2.791
|
-0.923
|
— |
-0.994
|
— | — | — | — | — |