Hg_chrom3_TN10mRNA_4877
Organism: Heterodera glycines Gene Locus: chr3:2753362-2754677 Feature type: polypeptideProtein Sequence
Length: 292
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 0.717 | 0.311 | 1.181 | 0.571 | 2.459 | 2.568 | 0.342 | 0.304 | 0.417 | 0.363 | 1.007 | 0.476 | 4.017 | 0.629 | 0.783 | 0.561 | 0.571 | 0.263 | 0.504 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4618
|
— | — |
2.111
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
3.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
63-84
|
0.941
|
— | — |
0.000
|
— | — |
0.036
|
0.063
|
0.006
|
0.114
|
0.376
|
0.250
|
0.305
|
0.005
|
0.703
|
0.212
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001181
|
3.000
|
2.000
|
Hsc_gene_18967.t1;Hsc_gene_18980.t1
|
Hsc_gene_16823.t1;Hsc_gene_18967.t1;Hsc_gene_18980.t1;Hsc_gene_25248.t1;Hsc_gene_25248.t2;Hsc_gene_25812.t1;Hsc_gene_6621.t1
|
F23H12.4b
|
P34687.2 Cuticle collagen 34 [Caenorhabditis elegans]
|
KAH7725483.1 Nematode cuticle collagen [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.945|GO:0032501_0.891|GO:0032502_0.882|GO:0048856_0.882|GO:0007275_0.860|GO:0005575_0.782|GO:0110165_0.781|GO:0040002_0.670|GO:0042335_0.670|GO:0071944_0.647|GO:0030312_0.639|GO:0031012_0.615|GO:0062023_0.615
|
IPR002486+13-65_16-65+|IPR008160+143-199_211-269+|IPR050632+19-275+
|
SM01088+13-65+
|
PF01391+143-199_211-269+Collagen_triple_helix_repeat_(20_copies)|PF01484+16-65+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+19-275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
84-292
|
1.000
|
1-83
|
9han_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
28549.680
|
7.415
|
2.000
|
11.301
|
4.452
|
32.877
|
67.123
|
6.164
|
5.137
|
70.890
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
15393.800
|
1.066
|
4.031
|
96.446
|
32302.808
|
115877.037
|
20819.369
|
642.388
|
1.382
|
3693.158
|
2110.968
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.361
|
4.713
|
8.354
|
1.858
|
-2.468
|
-7.624
|
5.169
|
-11.686
|
6.457
|
3.351
|
— | — |
No JSON data available for plots.