Hg_chrom3_TN10mRNA_4883
Organism: Heterodera glycines Gene Locus: chr3:2785340-2790947 Feature type: polypeptideProtein Sequence
Length: 495
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.01 | 0.752 | 1.249 | 1.324 | 1.414 | 1.295 | 0.914 | 1.717 | 0.898 | 0.792 | 1.071 | 2.496 | 1.066 | 0.505 | 0.866 | 0.808 | 1.027 | 0.979 | 0.622 | 0.475 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4624
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.124
|
0.066
|
0.018
|
0.261
|
0.404
|
0.396
|
0.353
|
0.053
|
0.665
|
0.300
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001930
|
2.000
|
2.000
|
Hsc_gene_18966.t1;Hsc_gene_18966.t2
|
— | — |
Q19459.1 Golgi apparatus protein 1 homolog [Caenorhabditis elegans]
|
NP_001367096.1 Golgi apparatus protein 1 homolog [Caenorhabditis elegans];CAH04737.1 Golgi apparatus protein 1 homolog [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.918|GO:0110165_0.914|GO:0071944_0.831|GO:0016020_0.810|GO:0005886_0.802|GO:0005622_0.782|GO:0005737_0.736|GO:0043226_0.718|GO:0043229_0.698|GO:0043227_0.682|GO:0043231_0.673|GO:0005773_0.633|GO:0012505_0.619|GO:0008150_0.616|GO:0005794_0.559|GO:0009987_0.550|GO:0003674_0.547|GO:0065007_0.506
|
IPR001893+133-190+|IPR039728+133-191+
|
— |
PF00839+133-190+Cysteine_rich_repeat
|
— |
PTHR11884+133-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
322-424
|
2.000
|
1-321;425-495
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
54817.910
|
5.280
|
-11.500
|
30.101
|
9.697
|
50.303
|
49.697
|
14.747
|
15.354
|
51.313
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
78.497
|
19.096
|
48.057
|
45.609
|
65.391
|
87.945
|
122.469
|
34.886
|
240.060
|
4.584
|
105.502
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.099
|
1.118
|
— |
0.486
|
0.443
|
0.492
|
-1.450
|
1.962
|
— | — | — | — | — |
No JSON data available for plots.