Hg_chrom3_TN10mRNA_4886
Organism: Heterodera glycines Gene Locus: chr3:2806336-2809550 Feature type: polypeptideProtein Sequence
Length: 413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.788 | 1.295 | 0.704 | 0.417 | 0.444 | 1.366 | 0.432 | 1.09 | 1.453 | 1.701 | 1.027 | 1.852 | 1.681 | 0.605 | 0.593 | 0.865 | 0.913 | 1.247 | 2.421 | 1.353 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4627
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
8-31
|
0.949
|
— | — | — | — |
0.002
|
— | — |
0.086
|
0.068
|
0.018
|
0.121
|
0.445
|
0.415
|
0.279
|
0.201
|
0.582
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001932
|
2.000
|
2.000
|
Hsc_gene_18995.t1;Hsc_gene_18995.t2
|
Hsc_gene_18995.t1;Hsc_gene_18995.t2
|
— |
Q17766.3 Folate transporter 1 [Caenorhabditis elegans]
|
KAI1713308.1 reduced folate carrier domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0051180|GO:0090482
|
GO:0008150_0.955|GO:0009987_0.905|GO:0005575_0.838|GO:0110165_0.838|GO:0006810_0.835|GO:0051179_0.835|GO:0051234_0.835|GO:0016020_0.807|GO:0071944_0.762|GO:0005886_0.757|GO:0003674_0.743|GO:0071705_0.719|GO:0051180_0.670|GO:0055085_0.651|GO:0005215_0.607|GO:0022857_0.607|GO:0008152_0.581|GO:0035461_0.570|GO:0044237_0.561|GO:0090482_0.553|GO:0044281_0.515
|
IPR002666+2-402_3-402+|IPR036259+3-406_19-405+
|
— |
PF01770+2-402+Reduced_folate_carrier
|
— |
PTHR10686+3-402+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-413
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
47763.060
|
9.687
|
17.500
|
18.402
|
15.981
|
40.920
|
59.080
|
11.864
|
6.538
|
44.068
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
42.273
|
3.902
|
20.839
|
15.215
|
28.292
|
19.076
|
51.043
|
14.892
|
1.028
|
126.705
|
72.843
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.186
|
1.827
|
— |
0.862
|
-0.552
|
1.431
|
— |
1.922
|
-6.754
|
3.788
|
— | — | — |
No JSON data available for plots.