SCN Proteipedia

Hg_chrom3_TN10mRNA_4888

Organism: Heterodera glycines Gene Locus: chr3:2813509-2817625 Feature type: polypeptide

Protein Sequence

Length: 374

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.933	0.56	1.021	0.461	1.248	0.754	0.891	1.203	1.604	1.012	0.77	2.517	0.817	0.977	0.982	1.07	1.052	0.932	0.823	1.258	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4629	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.676	0.146	0.082	0.617	0.041	0.155	0.110	0.234	0.222	0.238

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000808	3.000	3.000	Hsc_gene_18990.t1;Hsc_gene_25229.t1;Hsc_gene_25230.t1	Hsc_gene_18990.t1;Hsc_gene_25229.t1;Hsc_gene_25230.t1	M03F4.2a;M03F4.2b;T04C12.4;T04C12.5;T04C12.6;T25C8.2	P10986.2 Actin-4 [Caenorhabditis elegans]	ACT78498.1 actin 1 [Ditylenchus destructor];KAI1707515.1 actin domain-containing protein [Ditylenchus destructor];KAI1718177.1 actin domain-containing protein [Ditylenchus destructor];KAI1730931.1 actin domain-containing protein [Ditylenchus destructor];KAI1731358.1 actin domain-containing protein [Ditylenchus destructor]	No	-0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.893\|GO:0110165_0.892\|GO:0005622_0.778\|GO:0008150_0.777\|GO:0043226_0.684\|GO:0009987_0.667\|GO:0005737_0.641\|GO:0043229_0.607\|GO:0016020_0.566	IPR004000+4-374_6-374_8-368_27-36_50-61_62-84_116-129_141-160_237-253+\|IPR004001+54-64_357-365+\|IPR020902+105-117+\|IPR043129+5-154_148-374+	SM00268+6-374+	PF00022+4-374+Actin	G3DSA:3.30.420.40:FF:000058+340-368+Putative_actin-related_protein_5\|G3DSA:3.30.420.40:FF:000131+241-338+Actin,_alpha_skeletal_muscle\|G3DSA:3.30.420.40:FF:000291+2-167+Actin,_alpha_skeletal_muscle\|G3DSA:3.90.640.10:FF:000047+181-272+Actin,_alpha_skeletal_muscle	PTHR11937+8-368+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	373-374	1.000	1-372	1d4x_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.515	41500.380	5.155	-7.500	25.401	10.695	44.652	55.348	12.299	13.102	50.000

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	12336.564	7857.914	9996.606	13296.344	19302.103	19252.615	21042.659	21435.066	4397.871	8605.325	6802.130

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.120	0.622	0.519	0.506	—	0.139	—	—	—	1.760	1.690	—	—

No JSON data available for plots.

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