Hg_chrom3_TN10mRNA_4891
Organism: Heterodera glycines Gene Locus: chr3:2841018-2845812 Feature type: polypeptideProtein Sequence
Length: 468
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.845 | 1.292 | 0.66 | 0.516 | 0.427 | 1.37 | 0.509 | 0.855 | 1.472 | 1.761 | 0.971 | 1.76 | 1.84 | 0.534 | 0.436 | 0.946 | 0.911 | 1.327 | 1.644 | 1.32 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4632
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.825
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
8-31
|
0.962
|
— | — | — | — |
0.001
|
— | — |
0.105
|
0.080
|
0.018
|
0.114
|
0.454
|
0.440
|
0.312
|
0.102
|
0.576
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001932
|
2.000
|
2.000
|
Hsc_gene_18995.t1;Hsc_gene_18995.t2
|
Hsc_gene_18995.t1;Hsc_gene_18995.t2
|
— |
Q17766.3 Folate transporter 1 [Caenorhabditis elegans]
|
KAI1713308.1 reduced folate carrier domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0051180|GO:0090482
|
GO:0008150_0.957|GO:0009987_0.916|GO:0006810_0.877|GO:0051179_0.877|GO:0051234_0.877|GO:0005575_0.850|GO:0110165_0.850|GO:0016020_0.819|GO:0071944_0.796|GO:0005886_0.787|GO:0003674_0.748|GO:0071705_0.744|GO:0055085_0.705|GO:0051180_0.670|GO:0005215_0.657|GO:0022857_0.657|GO:0008152_0.576|GO:0035461_0.568|GO:0044237_0.562|GO:0090482_0.551|GO:0044281_0.520
|
IPR002666+2-443_2-456_3-465+|IPR036259+3-456_19-456+
|
— |
PF01770+2-443+Reduced_folate_carrier
|
— |
PTHR10686+3-465+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
53231.560
|
9.319
|
15.000
|
16.453
|
14.957
|
39.530
|
60.470
|
10.256
|
6.197
|
45.940
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
203.211
|
7.189
|
23.868
|
30.054
|
64.990
|
52.603
|
62.495
|
18.601
|
148.524
|
680.232
|
452.357
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.496
|
1.926
|
— |
1.077
|
— | — |
-1.611
|
1.886
|
— | — |
-3.177
|
— | — |
No JSON data available for plots.