Hg_chrom3_TN10mRNA_4892
Organism: Heterodera glycines Gene Locus: chr3:2846204-2853101 Feature type: polypeptideProtein Sequence
Length: 493
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.651 | 0.66 | 0.959 | 0.28 | 1.454 | 0.624 | 0.942 | 0.71 | 0.631 | 0.685 | 1.322 | 1.312 | 1.127 | 0.858 | 1.863 | 0.753 | 1.297 | 0.768 | 0.156 | 0.418 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4633
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKHK,RSVKRRG,RRVTDFDELVRQLEEKQRR,RRRRKEQRENRDEEKKKAP,KRNNKERPEREIYRPGYRKPVAVKSHK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.499
|
0.048
|
0.006
|
0.379
|
0.046
|
0.017
|
0.108
|
0.009
|
0.039
|
0.159
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001933
|
2.000
|
2.000
|
Hsc_gene_18996.t1;Hsc_gene_18996.t2
|
— | — | — |
KAF7633123.1 Smg4_UPF3 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.360
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000184
|
GO:0005575_0.936|GO:0008150_0.936|GO:0110165_0.936|GO:0009987_0.898|GO:0003674_0.881|GO:0016020_0.860|GO:0005622_0.843|GO:0005488_0.822|GO:0043226_0.813|GO:0065007_0.805|GO:0043229_0.797|GO:0050789_0.783|GO:0050794_0.766|GO:0008152_0.763|GO:0009058_0.763|GO:0044238_0.762|GO:0044237_0.755|GO:0044249_0.745|GO:0043227_0.741|GO:0009059_0.737|GO:0043170_0.737|GO:0097159_0.734|GO:0010467_0.728|GO:0043231_0.721|GO:0048518_0.716|GO:0003676_0.711|GO:0003723_0.711|GO:0005737_0.711|GO:0019222_0.709|GO:0019538_0.708|GO:0048522_0.708|GO:0031323_0.707|GO:0060255_0.705|GO:0080090_0.703|GO:0009889_0.698|GO:0031326_0.696|GO:0010556_0.695|GO:0010468_0.693|GO:0009893_0.688|GO:0010604_0.686|GO:0031325_0.685|GO:0006412_0.683|GO:0006414_0.683|GO:0009891_0.683|GO:0031328_0.683|GO:0010557_0.682|GO:0051246_0.682|GO:0010628_0.677|GO:0010608_0.676|GO:0006417_0.673|GO:0045727_0.670|GO:0051247_0.670|GO:0003677_0.661|GO:0003729_0.659|GO:0043565_0.656|GO:0032991_0.650|GO:0042162_0.650|GO:0005634_0.626|GO:0031974_0.617|GO:0043233_0.613|GO:0031981_0.609|GO:0070013_0.609|GO:0005829_0.598|GO:0005654_0.575|GO:0140513_0.556|GO:0035145_0.540
|
IPR005120+105-264+|IPR012677+15-183+|IPR039722+104-484+
|
— |
PF03467+105-264+Smg-4/UPF3_family
|
— |
PTHR13112+104-484+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39;227-493
|
1.000
|
40-226
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
53760.640
|
10.262
|
22.500
|
33.266
|
7.099
|
51.724
|
48.276
|
19.270
|
13.996
|
53.753
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
tan
|
894.800
|
985.638
|
975.144
|
1084.945
|
1410.658
|
1055.342
|
652.130
|
382.356
|
1296.966
|
487.196
|
834.240
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.245
|
— |
0.263
|
0.346
|
-0.404
|
-0.685
|
-1.571
|
0.912
|
— | — | — | — | — |
No JSON data available for plots.