Hg_chrom3_TN10mRNA_4896
Organism: Heterodera glycines Gene Locus: chr3:2857799-2861940 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.671 | 1.022 | 0.699 | 0.663 | 1.877 | 3.663 | 0.327 | 1.099 | 0.916 | 0.854 | 1.665 | 1.293 | 1.145 | 0.581 | 1.065 | 0.549 | 0.901 | 0.749 | 1.479 | 0.404 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4636
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKRK,KKKKIWFQNQRNRWKRQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.660
|
0.124
|
0.024
|
0.506
|
0.055
|
0.034
|
0.050
|
0.003
|
0.055
|
0.326
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_18999.t2
|
— | — | — |
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0008150_0.893|GO:0009987_0.749|GO:0005575_0.718|GO:0032501_0.706|GO:0005622_0.693|GO:0032502_0.693|GO:0110165_0.693|GO:0048856_0.690|GO:0043226_0.661|GO:0043229_0.645|GO:0065007_0.641|GO:0007275_0.627|GO:0050789_0.626|GO:0050794_0.615|GO:0003674_0.599|GO:0005488_0.599|GO:0048731_0.555|GO:0016020_0.543|GO:0043227_0.509
|
IPR001356+84-144_86-148_89-143_90-144_259-319_262-323_263-318_263-320+|IPR009057+84-144_189-219_255-321+|IPR050394+93-179+
|
SM00389+86-148_262-323+
|
PF00046+89-143_263-318+Homeodomain
|
— |
PTHR24340+93-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-104;224-269
|
2.000
|
105-223;270-364
|
1fjl_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.523
|
43158.740
|
8.371
|
8.000
|
33.516
|
9.615
|
61.538
|
38.462
|
18.407
|
15.110
|
35.989
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
red
|
138.752
|
135.689
|
377.599
|
191.365
|
112.536
|
97.488
|
195.883
|
237.960
|
12.582
|
91.909
|
57.911
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.246
|
0.359
|
-0.872
|
-0.800
|
— |
1.014
|
1.176
|
— | — |
4.138
|
— | — | — |
No JSON data available for plots.