Hg_chrom3_TN10mRNA_4897
Organism: Heterodera glycines Gene Locus: chr3:2863474-2863728 Feature type: polypeptideProtein Sequence
Length: 66
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.881 | 1.057 | 1.102 | 0.522 | 2.273 | 1.554 | 0.361 | 0.0 | 0.337 | 1.024 | 1.837 | 1.783 | 1.684 | 0.583 | 1.237 | 0.649 | 0.497 | 1.148 | 0.0 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4637
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.661
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.837
|
0.141
|
0.014
|
0.386
|
0.045
|
0.038
|
0.052
|
0.002
|
0.064
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001934
|
1.000
|
3.000
|
Hsc_gene_18999.t1;Hsc_gene_18999.t2;Hsc_gene_18999.t3
|
Hsc_gene_18999.t1;Hsc_gene_18999.t2;Hsc_gene_18999.t3
|
— | — |
KAH7724718.1 ventral anterior homeobox [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0008150_0.891|GO:0009987_0.801|GO:0005575_0.700|GO:0065007_0.693|GO:0110165_0.692|GO:0050789_0.683|GO:0050794_0.651|GO:0032501_0.650|GO:0005622_0.602|GO:0032502_0.601|GO:0048856_0.596|GO:0007275_0.586|GO:0043226_0.556|GO:0043229_0.547|GO:0016020_0.545|GO:0008152_0.543|GO:0009058_0.543|GO:0009059_0.543|GO:0010467_0.543|GO:0043170_0.543|GO:0044237_0.543|GO:0044249_0.543|GO:0019222_0.534|GO:0060255_0.528|GO:0031323_0.524|GO:0009889_0.516|GO:0010556_0.516|GO:0031326_0.516|GO:0010468_0.510
|
IPR001356+12-60_14-65_15-60+|IPR009057+10-60+|IPR050848+13-60+
|
SM00389+14-65+
|
PF00046+15-60+Homeodomain
|
— |
PTHR24333+13-60+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-66
|
3zob_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
7727.760
|
5.137
|
-1.000
|
37.879
|
9.091
|
56.061
|
43.939
|
18.182
|
19.697
|
40.909
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
5.257
|
4.759
|
13.255
|
2.007
|
6.129
|
3.884
|
19.979
|
6.179
|
2.570
|
0.000
|
1.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.254
|
-1.382
|
-2.620
|
1.574
|
— |
2.371
|
— |
1.833
|
— | — | — | — | — |
No JSON data available for plots.