SCN Proteipedia

Hg_chrom3_TN10mRNA_4901

Organism: Heterodera glycines Gene Locus: chr3:2875470-2880274 Feature type: polypeptide

Protein Sequence

Length: 437

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.931	1.171	0.666	0.868	1.106	2.288	0.708	0.915	0.814	0.99	1.318	1.211	1.017	0.44	1.821	0.948	0.9	0.867	0.528	0.673	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4639	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Migratory	0.995

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	NKVKKGKKEKK,KKMRSTKCALANKVKKGKK	23-44	0.989	—	—	—	—	0.000	—	—	0.611	0.158	0.041	0.359	0.100	0.028	0.096	0.108	0.192	0.243

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007456	1.000	1.000	Hsc_gene_19001.t1	—	—	Q3LU38.1 Homeobox protein prophet of Pit-1 [Alouatta belzebul]	XP_023237607.1 paired mesoderm homeobox protein 2A-like [Centruroides sculpturatus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.910\|GO:0009987_0.797\|GO:0032502_0.753\|GO:0048856_0.753\|GO:0032501_0.752\|GO:0005575_0.732\|GO:0110165_0.713\|GO:0005622_0.681\|GO:0003674_0.673\|GO:0007275_0.669\|GO:0043226_0.655\|GO:0005488_0.653\|GO:0043229_0.642\|GO:0065007_0.616\|GO:0097159_0.606\|GO:0050789_0.603\|GO:0050794_0.593\|GO:0003676_0.592\|GO:0048731_0.572\|GO:0016020_0.571\|GO:0043227_0.514\|GO:0003677_0.511\|GO:0008152_0.509\|GO:0009058_0.509\|GO:0009059_0.509\|GO:0043170_0.509\|GO:0044237_0.509\|GO:0044249_0.509\|GO:0010467_0.502	IPR001356+178-239_180-243_181-238_181-240_275-335_277-339_280-333_281-336+\|IPR009057+107-141_167-241_273-336+\|IPR017970+214-237_310-333+\|IPR050649+180-278+	SM00389+180-243_277-339+	PF00046+181-238_280-333+Homeodomain	—	PTHR24329+180-278+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-17;124-212;422-437	2.000	18-123;213-421	9d9v_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.516	49834.740	10.495	36.000	29.748	8.467	55.835	44.165	19.451	10.297	45.309

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	blue	873.431	124.484	260.416	160.573	104.954	80.556	132.894	557.382	896.247	2616.101	1879.021

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.835	0.230	-0.589	-0.645	-0.367	0.734	2.677	-1.920	—	—	-4.392	-5.556	—

No JSON data available for plots.

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