Hg_chrom3_TN10mRNA_4903
Organism: Heterodera glycines Gene Locus: chr3:2883623-2884617 Feature type: polypeptideProtein Sequence
Length: 205
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.134 | 0.908 | 1.242 | 1.177 | 0.732 | 1.376 | 0.987 | 1.707 | 1.084 | 0.725 | 0.961 | 2.009 | 1.355 | 1.032 | 0.299 | 1.394 | 0.64 | 1.109 | 0.375 | 0.43 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4641
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_19009;Hsc_gene_19009a;Hsc_gene_24840;Hsc_gene_24862;Hsc_gene_24873;Hsc_gene_19006
|
— | — |
21-pJ2_J3
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-19
|
0.996
|
1.000
|
0.000
|
0.000
|
0.655
|
0.281
|
0.018
|
0.457
|
0.069
|
0.177
|
0.075
|
0.026
|
0.108
|
0.276
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000088
|
11.000
|
5.000
|
Hsc_gene_11801.t1;Hsc_gene_19009.t4;Hsc_gene_24840.t1;Hsc_gene_24862.t1;Hsc_gene_24862.t2
|
Hsc_gene_19006.t1;Hsc_gene_19009.t1;Hsc_gene_19009.t2;Hsc_gene_19009.t3;Hsc_gene_19009.t4
|
— | — |
AJR19774.1 esophageal gland-localized secretory protein 6 [Heterodera glycines]
|
WP_338023536
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
126-205
|
1.000
|
1-125
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
21869.690
|
5.516
|
-3.500
|
22.439
|
10.244
|
45.366
|
54.634
|
11.220
|
11.220
|
58.537
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1826.402
|
1.833
|
3.633
|
529.418
|
627.989
|
60.908
|
65.919
|
10.750
|
248.090
|
7316.771
|
4287.337
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
8.037
|
7.291
|
— |
-3.352
|
— |
-2.616
|
2.760
|
-4.979
|
— | — | — | — |