Hg_chrom3_TN10mRNA_4919
Organism: Heterodera glycines Gene Locus: chr3:3011492-3012428 Feature type: polypeptideProtein Sequence
Length: 167
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 0.836 | 1.198 | 0.413 | 1.397 | 1.842 | 0.57 | 0.599 | 0.931 | 1.376 | 0.817 | 2.466 | 2.994 | 0.806 | 0.978 | 0.684 | 0.785 | 0.544 | 0.921 | 0.528 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4655
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_17819
|
— | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
mitochondria
|
— |
43-63
|
0.985
|
— | — |
1-20
|
0.994
|
1.000
|
0.000
|
0.000
|
0.457
|
0.215
|
0.038
|
0.443
|
0.078
|
0.224
|
0.148
|
0.011
|
0.070
|
0.205
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001183
|
2.000
|
3.000
|
Hsc_gene_16503.t1;Hsc_gene_5507.t1;Hsc_gene_5507.t2
|
— | — | — |
KAI1726783.1 eukaryotic glutathione synthase, ATP binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016874
|
GO:0008150_0.936|GO:0003674_0.840|GO:0050896_0.802|GO:0008152_0.766|GO:0009987_0.663|GO:0005488_0.574|GO:0005515_0.554|GO:0005575_0.540|GO:0110165_0.539|GO:0044237_0.527|GO:0009058_0.525|GO:0044249_0.511|GO:0042221_0.509
|
IPR005615+38-165_52-165+|IPR014042+97-143+|IPR014049+52-84+
|
— |
PF03917+52-165+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+38-165+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
167-167
|
1.000
|
1-166
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
19432.170
|
4.527
|
-7.000
|
26.347
|
14.970
|
46.707
|
53.293
|
11.377
|
14.970
|
40.719
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
25.336
|
1.077
|
1.292
|
190.229
|
53.410
|
11.736
|
8.418
|
0.280
|
13.821
|
0.564
|
6.246
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
7.335
|
7.289
|
-1.864
|
-2.172
|
— |
-5.510
|
5.074
|
— | — | — | — | — |