Hg_chrom3_TN10mRNA_4924
Organism: Heterodera glycines Gene Locus: chr3:3085367-3090809 Feature type: polypeptideProtein Sequence
Length: 618
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 0.866 | 0.618 | 0.614 | 1.645 | 2.904 | 0.462 | 0.809 | 0.755 | 0.875 | 1.692 | 1.333 | 1.348 | 0.591 | 1.156 | 0.693 | 0.928 | 0.883 | 1.618 | 0.428 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4660
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.619
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
VKKMRPAKRALANKGKNAKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.601
|
0.152
|
0.037
|
0.407
|
0.103
|
0.053
|
0.107
|
0.128
|
0.301
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003515
|
1.000
|
2.000
|
Hsc_gene_17829.t1;Hsc_gene_17829.t2
|
— | — |
Q6DJN3.1 POU domain, class 3, transcription factor 4-B [Xenopus laevis]
|
EDO33532.1 predicted protein, partial [Nematostella vectensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003677|GO:0003700|GO:0006355
|
GO:0008150_0.942|GO:0009987_0.860|GO:0005575_0.847|GO:0065007_0.809|GO:0110165_0.804|GO:0003674_0.802|GO:0050789_0.793|GO:0005488_0.785|GO:0005622_0.770|GO:0050794_0.745|GO:0043226_0.738|GO:0043229_0.722|GO:0097159_0.701|GO:0003676_0.679|GO:0016020_0.658|GO:0008152_0.631|GO:0009058_0.631|GO:0009059_0.631|GO:0043170_0.631|GO:0044237_0.631|GO:0044249_0.631|GO:0003677_0.623|GO:0010467_0.623|GO:0044238_0.623|GO:0006139_0.613|GO:0032501_0.613|GO:0032502_0.606|GO:0019222_0.603|GO:0090304_0.599|GO:0031323_0.597|GO:0043565_0.590|GO:0060255_0.588|GO:0034654_0.587|GO:0043227_0.586|GO:0080090_0.584|GO:0141187_0.583|GO:0016070_0.578|GO:0032774_0.577|GO:0009889_0.575|GO:0010556_0.575|GO:0031326_0.575|GO:0010468_0.569|GO:0043231_0.566|GO:0019219_0.553|GO:0048856_0.548|GO:0051252_0.548|GO:0006351_0.546|GO:2001141_0.541|GO:0006355_0.540|GO:0048518_0.517
|
IPR000327+380-454_384-452_422-435+|IPR001356+5-65_7-69_11-63_88-148_90-152_94-146_94-148_153-213_155-217_159-207_159-208_222-282_224-286_229-283_230-281_460-520_462-524_466-514+|IPR009057+11-66_94-154_159-209_229-284_466-516+|IPR010982+384-453_385-453+|IPR013847+399-416_422-435_438-453+|IPR051000+465-514+
|
SM00352+380-454+|SM00389+7-69_90-152_155-217_224-286_462-524+
|
PF00046+11-63_94-146_159-208_230-281_466-514+Homeodomain|PF00157+384-452+Pou_domain_-_N-terminal_to_homeobox_domain
|
— |
PTHR24324+465-514+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;306-388;604-618
|
2.000
|
25-305;389-603
|
7xrc_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
72040.010
|
9.860
|
27.000
|
31.715
|
10.032
|
57.282
|
42.718
|
18.447
|
13.269
|
39.806
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
230.041
|
212.610
|
139.756
|
86.665
|
50.525
|
49.369
|
667.459
|
44.837
|
171.461
|
408.627
|
306.984
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.836
|
-1.432
|
-0.579
|
-0.813
|
— |
3.766
|
— |
4.038
|
— | — | — | — | — |
No JSON data available for plots.