Hg_chrom3_TN10mRNA_4926
Organism: Heterodera glycines Gene Locus: chr3:3095375-3103853 Feature type: polypeptideProtein Sequence
Length: 970
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.187 | 1.151 | 0.694 | 0.569 | 0.361 | 1.11 | 0.835 | 0.773 | 1.191 | 1.519 | 0.453 | 1.637 | 1.489 | 1.289 | 0.736 | 1.694 | 0.744 | 0.984 | 0.714 | 0.728 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4662
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RLPKRRV
|
— | — |
59-89
|
0.943
|
— | — |
0.000
|
— | — |
0.128
|
0.156
|
0.030
|
0.247
|
0.228
|
0.485
|
0.400
|
0.050
|
0.546
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003516
|
2.000
|
1.000
|
Hsc_gene_17824.t1
|
Hsc_gene_17824.t1
|
— |
Q21219.2 Peptide transporter family 1 [Caenorhabditis elegans]
|
KAI1721764.1 POT family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.894|GO:0005575_0.863|GO:0110165_0.860|GO:0016020_0.813|GO:0009987_0.793|GO:0003674_0.775|GO:0051179_0.740|GO:0006810_0.729|GO:0051234_0.729|GO:0071944_0.653|GO:0005886_0.635|GO:0055085_0.633|GO:0071705_0.612|GO:0005215_0.580|GO:0022857_0.580|GO:0005622_0.535
|
IPR000109+150-496+|IPR036259+54-498_71-269_801-921+
|
— |
PF00854+150-496+POT_family
|
— |
PTHR11654+68-882+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-62;648-705
|
2.000
|
63-647;706-970
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.920
|
103680.220
|
8.175
|
13.500
|
14.124
|
10.309
|
39.794
|
60.206
|
8.144
|
5.979
|
57.216
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
499.719
|
208.177
|
763.412
|
227.862
|
86.908
|
69.703
|
92.471
|
393.637
|
82.000
|
1433.955
|
854.546
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.648
|
— |
-1.637
|
-1.423
|
— | — |
2.394
|
-1.948
|
-4.239
|
— |
-3.617
|
— | — |
No JSON data available for plots.