Hg_chrom3_TN10mRNA_4930
Organism: Heterodera glycines Gene Locus: chr3:3121410-3127490 Feature type: polypeptideProtein Sequence
Length: 1,025
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.066 | 0.839 | 0.922 | 1.11 | 0.862 | 1.401 | 0.523 | 0.829 | 1.084 | 1.332 | 0.517 | 1.32 | 1.816 | 0.657 | 1.374 | 1.115 | 0.832 | 1.212 | 1.126 | 0.832 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4665
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — |
0.720
|
0.429
|
4.000
|
— |
0.209
|
0.161
|
0.073
|
0.256
|
0.456
|
0.315
|
0.222
|
0.023
|
0.670
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003517
|
2.000
|
1.000
|
Hsc_gene_17820.t1
|
Hsc_gene_17820.t1;Hsc_gene_25273.t2;Hsc_gene_25273.t3
|
— |
Q5HYA8.2 Meckelin [Homo sapiens]
|
KAI1718517.1 meckelin (Transmembrane protein 67) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0036038|GO:0060271
|
GO:0008150_0.966|GO:0009987_0.921|GO:0005575_0.915|GO:0110165_0.915|GO:0071944_0.863|GO:0065007_0.857|GO:0005886_0.850|GO:0016020_0.850|GO:0050789_0.840|GO:0050896_0.826|GO:0006810_0.815|GO:0051179_0.815|GO:0051234_0.815|GO:0050794_0.813|GO:0051716_0.789|GO:0005622_0.775|GO:0016043_0.749|GO:0071840_0.749|GO:0043226_0.732|GO:0005737_0.730|GO:0048519_0.730|GO:0048523_0.717|GO:0051641_0.714|GO:0043227_0.706|GO:0043229_0.706|GO:0006996_0.696|GO:0030030_0.693|GO:0051649_0.693|GO:0120036_0.693|GO:0033036_0.692|GO:0008104_0.691|GO:0070727_0.691|GO:0051128_0.689|GO:0016192_0.688|GO:0043231_0.687|GO:0044085_0.687|GO:0022607_0.683|GO:0046907_0.682|GO:0007010_0.677|GO:0007017_0.676|GO:0007049_0.676|GO:0022402_0.676|GO:0030031_0.675|GO:0033043_0.675|GO:0033365_0.675|GO:0048193_0.675|GO:0051129_0.675|GO:0120031_0.675|GO:0007018_0.674|GO:0051640_0.674|GO:0051656_0.674|GO:0051726_0.674|GO:0070925_0.674|GO:0010564_0.673|GO:0000226_0.670|GO:0001578_0.670|GO:0005929_0.670|GO:0006903_0.670|GO:0007098_0.670|GO:0010639_0.670|GO:0010824_0.670|GO:0010826_0.670|GO:0010948_0.670|GO:0010970_0.670|GO:0030705_0.670|GO:0030990_0.670|GO:0031023_0.670|GO:0031503_0.670|GO:0032886_0.670|GO:0032991_0.670|GO:0035082_0.670|GO:0035735_0.670|GO:0042073_0.670|GO:0042995_0.670|GO:0044782_0.670|GO:0045786_0.670|GO:0046605_0.670|GO:0046606_0.670|GO:0048199_0.670|GO:0051298_0.670|GO:0051493_0.670|GO:0051494_0.670|GO:0051648_0.670|GO:0051650_0.670|GO:0060271_0.670|GO:0061512_0.670|GO:0097712_0.670|GO:0098590_0.670|GO:0099111_0.670|GO:0120025_0.670|GO:1905349_0.670|GO:0005773_0.667|GO:0003674_0.659|GO:0012505_0.657|GO:0031090_0.598|GO:0031982_0.596|GO:0005783_0.583|GO:0097708_0.574|GO:0031410_0.572|GO:0032501_0.569|GO:0031984_0.566|GO:0005789_0.557|GO:0042175_0.557|GO:0098827_0.557|GO:0005488_0.555|GO:0008152_0.555|GO:0007154_0.552|GO:0012506_0.552|GO:0030659_0.551|GO:0023052_0.547|GO:0032502_0.537|GO:0048856_0.537|GO:0044238_0.533|GO:0005515_0.531|GO:0007165_0.523|GO:0042221_0.513|GO:0007275_0.512|GO:0043170_0.508|GO:0019538_0.504|GO:0048731_0.504|GO:0007166_0.503
|
IPR019170+32-1025_165-1025+
|
— |
PF09773+165-1025+Meckelin_(Transmembrane_protein_67)
|
— |
PTHR21274+32-1025+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1025
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
115731.970
|
7.194
|
7.500
|
22.049
|
12.488
|
44.000
|
56.000
|
11.805
|
10.244
|
49.756
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1631.779
|
1905.261
|
661.476
|
296.278
|
95.300
|
42.087
|
81.435
|
272.075
|
8.807
|
5874.711
|
3360.752
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.756
|
-2.822
|
-1.050
|
-1.667
|
-1.165
|
0.962
|
2.595
|
-1.601
|
-9.537
|
5.308
|
-5.558
|
— | — |