Hg_chrom3_TN10mRNA_4931
Organism: Heterodera glycines Gene Locus: chr3:3136841-3138617 Feature type: polypeptideProtein Sequence
Length: 155
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.975 | 1.35 | 1.056 | 0.89 | 1.183 | 1.985 | 0.384 | 0.968 | 0.86 | 1.308 | 0.88 | 1.898 | 3.226 | 0.744 | 1.317 | 0.829 | 0.317 | 0.391 | 0.496 | 0.569 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4666
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.005
|
— | — |
0.385
|
0.290
|
0.016
|
0.490
|
0.166
|
0.176
|
0.228
|
0.014
|
0.053
|
0.390
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001183
|
2.000
|
3.000
|
Hsc_gene_16503.t1;Hsc_gene_5507.t1;Hsc_gene_5507.t2
|
— | — | — |
KAI1726783.1 eukaryotic glutathione synthase, ATP binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016874
|
— |
IPR005615+66-143+|IPR014042+89-132+|IPR014049+50-76+
|
— |
PF03917+66-143+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-155
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
18210.770
|
6.701
|
0.500
|
27.097
|
16.129
|
48.387
|
51.613
|
14.194
|
12.903
|
40.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
46.586
|
2.116
|
1.195
|
160.942
|
68.952
|
3.417
|
2.720
|
0.280
|
17.968
|
100.480
|
65.117
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.105
|
7.132
|
-1.254
|
-4.328
|
— |
-3.719
|
— | — | — | — | — | — |
No JSON data available for plots.