Hg_chrom3_TN10mRNA_4932
Organism: Heterodera glycines Gene Locus: chr3:3142955-3148229 Feature type: polypeptideProtein Sequence
Length: 427
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.953 | 1.089 | 0.809 | 1.292 | 1.054 | 1.441 | 0.585 | 1.639 | 0.833 | 0.949 | 1.206 | 1.929 | 1.236 | 0.721 | 1.004 | 0.903 | 0.998 | 1.171 | 1.261 | 0.551 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4667
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.375
|
0.234
|
0.032
|
0.480
|
0.179
|
0.192
|
0.241
|
0.097
|
0.668
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000810
|
4.000
|
2.000
|
Hsc_gene_17814.t1;Hsc_gene_19011.t1
|
Hsc_gene_17814.t1
|
— |
Q9NF14.1 BTB and MATH domain-containing protein 40 [Caenorhabditis elegans]
|
KAI3413804.1 BTB/POZ domain [Globodera pallida]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0016567
|
GO:0008150_0.932|GO:0005575_0.882|GO:0110165_0.826|GO:0005622_0.729|GO:0043226_0.699|GO:0016020_0.683|GO:0009987_0.672|GO:0043229_0.660|GO:0003674_0.627|GO:0008152_0.608|GO:0044238_0.589|GO:0043170_0.569|GO:0005488_0.548|GO:0043227_0.544|GO:0043231_0.528|GO:0065007_0.516|GO:0005515_0.508
|
IPR000210+189-298_199-265_199-301+|IPR002083+26-155_57-157+|IPR008974+21-161+|IPR011333+170-341_179-297+|IPR045005+58-298+
|
SM00225+199-301+
|
PF00651+189-298+BTB/POZ_domain|PF22486+26-155+MATH_domain
|
— |
PTHR26379+58-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
423-427
|
1.000
|
1-422
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
48194.300
|
8.487
|
16.000
|
26.932
|
11.241
|
49.649
|
50.351
|
16.159
|
10.773
|
49.883
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
126.175
|
147.627
|
49.255
|
52.161
|
46.275
|
76.194
|
256.560
|
72.319
|
1.382
|
288.331
|
165.353
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.814
|
-1.638
|
— | — |
0.733
|
1.762
|
— |
1.969
|
-7.905
|
5.569
|
— | — | — |
No JSON data available for plots.