SCN Proteipedia

Hg_chrom3_TN10mRNA_4935

Organism: Heterodera glycines Gene Locus: chr3:3178779-3182883 Feature type: polypeptide

Protein Sequence

Length: 294

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.91	0.791	0.557	0.704	2.098	1.832	0.324	0.51	1.209	0.919	1.907	1.401	0.756	0.327	1.735	0.729	0.892	0.722	1.57	0.8	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4670	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-ppJ2_pJ2_J3_Females	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKMELICISSKRYAK,RKWDKLAEHTAQIKKKME,KKVRSVKCALANKGKNKKE	—	—	—	—	—	—	0.000	—	—	0.613	0.201	0.028	0.469	0.112	0.038	0.062	0.057	0.187	0.208

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003519	1.000	2.000	Hsc_gene_17815.t1;Hsc_gene_17815.t2	—	—	Q06453.2 Homeobox protein aristaless [Drosophila melanogaster]	XP_046538006.1 double homeobox protein B [Equus quagga]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677	GO:0008150_0.872\|GO:0005575_0.826\|GO:0009987_0.798\|GO:0110165_0.796\|GO:0005622_0.786\|GO:0043226_0.752\|GO:0043229_0.737\|GO:0065007_0.726\|GO:0050789_0.701\|GO:0050794_0.691\|GO:0003674_0.687\|GO:0005488_0.687\|GO:0008152_0.634\|GO:0043170_0.634\|GO:0009058_0.633\|GO:0009059_0.633\|GO:0044237_0.633\|GO:0044249_0.633\|GO:0010467_0.626\|GO:0044238_0.624\|GO:0006139_0.619\|GO:0090304_0.603\|GO:0019222_0.599\|GO:0097159_0.596\|GO:0034654_0.595\|GO:0141187_0.590\|GO:0031323_0.589\|GO:0016070_0.587\|GO:0060255_0.586\|GO:0016020_0.584\|GO:0032774_0.582\|GO:0080090_0.582\|GO:0043228_0.578\|GO:0043232_0.578\|GO:0003676_0.575\|GO:0009889_0.575\|GO:0010556_0.572\|GO:0031326_0.572\|GO:0010468_0.568\|GO:0032501_0.565\|GO:0032502_0.560\|GO:0048856_0.554\|GO:0019219_0.552\|GO:0006351_0.547\|GO:0051252_0.546\|GO:2001141_0.544\|GO:0006355_0.542\|GO:0048518_0.539\|GO:0007275_0.530\|GO:0043227_0.528\|GO:0048522_0.528\|GO:0003677_0.521\|GO:0043565_0.513\|GO:0003690_0.512\|GO:1990837_0.510\|GO:0006366_0.507	IPR001356+1-61_3-65_6-60_71-131_80-129_80-135_88-129_156-216_158-220_163-207_163-215+\|IPR009057+6-66_74-131_164-218+	SM00389+3-65_80-135_158-220+	PF00046+6-60_80-129_163-215+Homeodomain	—	PTHR45793+7-70+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	294-294	1.000	1-293	1fjl_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.607	34820.960	10.033	17.500	37.755	8.503	58.844	41.156	22.109	15.646	36.054

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	blue	394.702	44.282	81.148	50.202	28.648	21.717	140.508	15.388	203.708	1430.831	904.921

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.644	—	-0.584	-0.843	—	2.704	—	3.330	-2.934	—	-5.314	—	—

No JSON data available for plots.

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