Hg_chrom3_TN10mRNA_4938
Organism: Heterodera glycines Gene Locus: chr3:3210514-3214502 Feature type: polypeptideProtein Sequence
Length: 443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.63 | 1.05 | 0.903 | 0.934 | 1.392 | 1.563 | 0.591 | 1.693 | 0.953 | 1.007 | 1.06 | 1.992 | 1.379 | 0.651 | 1.013 | 1.0 | 1.036 | 0.958 | 1.389 | 0.797 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4673
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.901
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKLEDELGMLKKKPS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.559
|
0.163
|
0.009
|
0.552
|
0.168
|
0.137
|
0.202
|
0.019
|
0.234
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000810
|
4.000
|
2.000
|
Hsc_gene_17814.t1;Hsc_gene_19011.t1
|
— | — |
Q9NF14.1 BTB and MATH domain-containing protein 40 [Caenorhabditis elegans]
|
KAI3413804.1 BTB/POZ domain [Globodera pallida]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0005515|GO:0016567
|
GO:0008150_0.878|GO:0009987_0.693|GO:0005575_0.673|GO:0110165_0.639|GO:0003674_0.624|GO:0065007_0.557|GO:0005622_0.554|GO:0005488_0.552|GO:0050789_0.545|GO:0016020_0.527|GO:0043226_0.526
|
IPR000210+273-382_283-349_283-385+|IPR001356+1-55_1-59_2-53_3-53+|IPR002083+106-241_110-239+|IPR008974+105-245+|IPR009057+3-55+|IPR011333+254-410_263-381+|IPR045005+142-381+
|
SM00225+283-385+|SM00389+1-59+
|
PF00046+3-53+Homeodomain|PF00651+273-382+BTB/POZ_domain|PF22486+110-239+MATH_domain
|
— |
PTHR26379+142-381+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-443
|
2e1o_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
51034.890
|
6.657
|
1.500
|
28.668
|
12.867
|
52.596
|
47.404
|
15.350
|
13.318
|
45.598
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
227.612
|
156.604
|
56.957
|
51.888
|
53.270
|
98.516
|
365.391
|
185.794
|
2.410
|
630.838
|
361.512
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.685
|
-1.731
|
— | — |
0.902
|
1.901
|
0.808
|
1.120
|
-5.190
|
4.675
|
— | — | — |
No JSON data available for plots.