Hg_chrom3_TN10mRNA_4943
Organism: Heterodera glycines Gene Locus: chr3:3258976-3264727 Feature type: polypeptideProtein Sequence
Length: 492
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.158 | 0.993 | 0.887 | 0.771 | 0.813 | 0.625 | 0.75 | 1.524 | 1.355 | 1.401 | 0.708 | 1.196 | 1.129 | 1.016 | 1.452 | 0.726 | 0.9 | 1.263 | 1.094 | 0.598 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4678
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.721
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
ANKKKMKGKPPLP,RRRENGELPCPLKKHRQ
|
47-69
|
0.914
|
— | — | — | — |
0.000
|
— | — |
0.211
|
0.343
|
0.141
|
0.372
|
0.821
|
0.321
|
0.448
|
0.021
|
0.286
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003521
|
2.000
|
1.000
|
Hsc_gene_17835.t1
|
Hsc_gene_17835.t1
|
— |
P37287.1 Phosphatidylinositol N-acetylglucosaminyltransferase subunit A [Homo sapiens]
|
KAI1693355.1 PIGA (GPI anchor biosynthesis) domain-containing protein [Ditylenchus destructor]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000506|GO:0006506|GO:0016757|GO:0017176
|
GO:0008150_0.717|GO:0009987_0.607|GO:0003674_0.583|GO:0005575_0.563|GO:0110165_0.560
|
IPR001296+255-397+|IPR013234+98-188+|IPR039507+60-457+
|
— |
PF00534+255-397+Glycosyl_transferases_group_1|PF08288+98-188+PIGA_(GPI_anchor_biosynthesis)
|
G3DSA:3.40.50.2000:FF:000026+60-256+Phosphatidylinositol_N-acetylglucosaminyltransferase_subunit_A
|
PTHR45871+58-489+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23;487-492
|
1.000
|
24-486
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
54523.230
|
8.947
|
17.500
|
24.593
|
10.569
|
41.870
|
58.130
|
14.837
|
9.756
|
51.829
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
165.574
|
627.760
|
191.935
|
68.108
|
54.865
|
76.756
|
123.903
|
188.618
|
31.581
|
201.221
|
128.518
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.941
|
-3.341
|
-1.385
|
— |
0.500
|
0.703
|
1.192
|
-0.462
|
— | — | — | — | — |
No JSON data available for plots.