Hg_chrom3_TN10mRNA_4944
Organism: Heterodera glycines Gene Locus: chr3:3284905-3290327 Feature type: polypeptideProtein Sequence
Length: 488
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.048 | 1.001 | 0.894 | 0.777 | 0.854 | 0.631 | 0.756 | 1.537 | 1.366 | 1.44 | 0.714 | 1.205 | 1.138 | 1.025 | 1.422 | 0.732 | 0.907 | 1.273 | 1.103 | 0.603 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4679
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
ANKKKMKGKPPL,RRRENGELPCPLKKHRQ
|
43-65
|
0.914
|
— | — | — | — |
0.000
|
— | — |
0.212
|
0.338
|
0.123
|
0.374
|
0.825
|
0.312
|
0.444
|
0.017
|
0.270
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003521
|
2.000
|
1.000
|
Hsc_gene_17835.t1
|
Hsc_gene_17835.t1
|
— |
P37287.1 Phosphatidylinositol N-acetylglucosaminyltransferase subunit A [Homo sapiens]
|
KAI1693355.1 PIGA (GPI anchor biosynthesis) domain-containing protein [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000506|GO:0006506|GO:0016757|GO:0017176
|
GO:0008150_0.711|GO:0009987_0.600|GO:0003674_0.586|GO:0005575_0.567|GO:0110165_0.561
|
IPR001296+253-393+|IPR013234+94-184+|IPR039507+56-453+
|
— |
PF00534+253-393+Glycosyl_transferases_group_1|PF08288+94-184+PIGA_(GPI_anchor_biosynthesis)
|
G3DSA:3.40.50.2000:FF:000026+56-251+Phosphatidylinositol_N-acetylglucosaminyltransferase_subunit_A
|
PTHR45871+54-485+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21;483-488
|
1.000
|
22-482
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
54253.920
|
8.679
|
15.500
|
24.795
|
10.656
|
42.213
|
57.787
|
14.754
|
10.041
|
51.230
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
106.048
|
198.365
|
187.665
|
81.187
|
49.077
|
106.646
|
76.392
|
213.172
|
20.982
|
106.035
|
69.584
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.311
|
-1.426
|
-1.098
|
-0.761
|
1.136
|
-0.474
|
0.892
|
-1.340
|
— | — | — | — | — |
No JSON data available for plots.