Hg_chrom3_TN10mRNA_4945
Organism: Heterodera glycines Gene Locus: chr3:3300806-3303362 Feature type: polypeptideProtein Sequence
Length: 196
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.89 | 0.475 | 0.557 | 0.528 | 0.595 | 2.093 | 0.911 | 0.0 | 1.814 | 1.448 | 0.541 | 3.001 | 1.984 | 0.589 | 0.833 | 1.312 | 0.92 | 0.928 | 0.392 | 0.9 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4680
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.919
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
5-35
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.067
|
0.290
|
0.026
|
0.133
|
0.182
|
0.368
|
0.405
|
0.031
|
0.741
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003520
|
2.000
|
1.000
|
Hsc_gene_17837.t1
|
Hsc_gene_17837.t1
|
— |
Q504N2.3 Solute carrier family 22 member 15 [Mus musculus]
|
KAH7694549.1 Protein K05F1.6 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.941|GO:0009987_0.904|GO:0051179_0.814|GO:0051234_0.813|GO:0006810_0.807|GO:0005575_0.782|GO:0003674_0.778|GO:0110165_0.777|GO:0016020_0.751|GO:0055085_0.735|GO:0071944_0.734|GO:0005886_0.726|GO:0005215_0.680|GO:0022857_0.680
|
IPR011701+2-127+|IPR020846+1-122+|IPR036259+1-131_2-127+
|
— |
PF07690+2-127+Major_Facilitator_Superfamily
|
— |
PTHR24064+3-131+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-196
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
21673.380
|
8.235
|
2.000
|
14.286
|
10.714
|
39.286
|
60.714
|
7.653
|
6.633
|
45.918
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
purple
|
87.326
|
89.835
|
81.496
|
47.545
|
37.901
|
50.484
|
93.417
|
80.208
|
31.366
|
178.197
|
115.269
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.368
|
-1.055
|
-0.670
|
— |
0.430
|
0.897
|
0.563
|
0.362
|
— | — | — | — | — |
No JSON data available for plots.