Hg_chrom3_TN10mRNA_4948
Organism: Heterodera glycines Gene Locus: chr3:3338302-3342232 Feature type: polypeptideProtein Sequence
Length: 379
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.644 | 0.982 | 0.911 | 1.274 | 0.704 | 0.88 | 0.848 | 2.375 | 1.173 | 1.034 | 0.56 | 0.776 | 1.393 | 1.573 | 1.238 | 1.206 | 0.865 | 0.959 | 1.218 | 0.931 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4683
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.258
|
0.287
|
0.023
|
0.293
|
0.125
|
0.084
|
0.156
|
0.049
|
0.338
|
0.516
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001184
|
3.000
|
2.000
|
Hsc_gene_17843.t1;Hsc_gene_17843.t2
|
Hsc_gene_17843.t1;Hsc_gene_17843.t2
|
— | — |
KAI1706013.1 zona pellucida-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.901|GO:0110165_0.900|GO:0071944_0.695|GO:0030312_0.568|GO:0031012_0.550|GO:0062023_0.549|GO:0060102_0.540
|
IPR001507+1-236_2-240_20-228+|IPR051962+7-239+
|
SM00241+2-240+
|
PF00100+20-228+Zona_pellucida-like_domain
|
— |
PTHR22907+7-239+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
236-323
|
2.000
|
1-235;324-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.873
|
42365.120
|
7.771
|
11.000
|
23.747
|
14.512
|
45.119
|
54.881
|
14.512
|
9.235
|
53.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
blue
|
170.268
|
5.107
|
3.896
|
4.473
|
5.940
|
9.908
|
18.547
|
15.588
|
0.000
|
721.127
|
412.072
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.911
|
— | — |
-10.305
|
— |
-6.541
|
— | — |
No JSON data available for plots.