SCN Proteipedia

Hg_chrom3_TN10mRNA_4955

Organism: Heterodera glycines Gene Locus: chr3:3424854-3427733 Feature type: polypeptide

Protein Sequence

Length: 342

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.714	0.748	1.276	0.807	1.218	0.975	1.009	0.731	1.365	1.185	1.019	2.408	0.975	0.731	0.895	0.752	1.007	1.24	0.45	0.774	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4689	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-Not_Clustered	0.449

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.267	0.622	0.228	0.607	0.177	0.302	0.122	0.151	0.118	0.227

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007457	1.000	1.000	Hsc_gene_11141.t1	Hsc_gene_11141.t1	—	P41938.1 Probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 [Caenorhabditis elegans]	KAI1719220.1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain-containing protein [Ditylenchus destructor]	No	-0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006631\|GO:0016491\|GO:0016616\|GO:0070403	GO:0008150_0.931\|GO:0009987_0.869\|GO:0003674_0.815\|GO:0008152_0.799\|GO:0005575_0.720\|GO:0003824_0.716\|GO:0044237_0.711\|GO:0110165_0.659\|GO:0044238_0.633\|GO:0044281_0.630\|GO:0009056_0.624\|GO:0006082_0.600\|GO:0019752_0.600\|GO:0043436_0.600\|GO:0005622_0.595\|GO:0032787_0.592\|GO:0044248_0.573\|GO:0016491_0.571\|GO:0044282_0.567\|GO:0016054_0.565\|GO:0046395_0.565\|GO:0072329_0.563\|GO:0005737_0.562\|GO:0016614_0.551\|GO:0016616_0.551\|GO:0006629_0.544\|GO:0016020_0.542\|GO:0044255_0.540\|GO:0006631_0.539\|GO:0016042_0.510\|GO:0044242_0.509\|GO:0009062_0.508\|GO:0006635_0.504\|GO:0019395_0.504\|GO:0030258_0.504\|GO:0034440_0.504	IPR006108+243-340+\|IPR006176+52-240+\|IPR006180+240-264+\|IPR008927+242-341+\|IPR013328+245-342+\|IPR022694+46-342+\|IPR036291+50-242+\|IPR052242+46-340+	—	PF00725+243-340+3-hydroxyacyl-CoA_dehydrogenase,_C-terminal_domain\|PF02737+52-240+3-hydroxyacyl-CoA_dehydrogenase,_NAD_binding_domain	G3DSA:3.40.50.720:FF:000009+50-245+Fatty_oxidation_complex,_alpha_subunit	PTHR43561+46-340+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-342	2d3t_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.584	37821.460	4.861	-8.500	26.901	8.187	45.322	54.678	12.573	14.327	50.585

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	6902.201	3675.036	676.211	7977.418	23148.598	16432.683	14181.405	2682.002	244.468	4223.771	2518.355

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.672	0.981	3.670	1.505	-0.481	-0.202	-2.728	2.549	-4.245	5.206	2.694	—	—

No JSON data available for plots.

Back to Browser