Hg_chrom3_TN10mRNA_4957
Organism: Heterodera glycines Gene Locus: chr3:3441651-3443908 Feature type: polypeptideProtein Sequence
Length: 288
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.776 | 0.821 | 1.437 | 0.231 | 0.801 | 1.488 | 0.347 | 1.157 | 0.985 | 1.105 | 1.225 | 1.157 | 0.868 | 0.283 | 1.637 | 0.968 | 0.684 | 0.801 | 0.817 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4691
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_11134;Hsc_gene_11133
|
— | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— | — | — |
30-50
|
0.967
|
1-23
|
0.993
|
1.000
|
0.000
|
0.000
|
0.148
|
0.170
|
0.010
|
0.360
|
0.115
|
0.109
|
0.277
|
0.002
|
0.144
|
0.893
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007459
|
1.000
|
1.000
|
Hsc_gene_11134.t1
|
Hsc_gene_11133.t1;Hsc_gene_11134.t1
|
— |
P86242.2 Papain inhibitor [Streptomyces mobaraensis]
|
ADL29728.1 expansin [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0005975|GO:0030246|GO:0030247
|
GO:0008150_0.941|GO:0005575_0.898|GO:0110165_0.898|GO:0003674_0.852|GO:0065007_0.828|GO:0050789_0.811|GO:0005488_0.780|GO:0008152_0.761|GO:0044238_0.756|GO:0043170_0.745|GO:0005515_0.737|GO:0048519_0.725|GO:0019222_0.724|GO:0060255_0.719|GO:0019538_0.715|GO:0080090_0.715|GO:0003824_0.703|GO:0009892_0.690|GO:0010605_0.686|GO:0065009_0.686|GO:0016787_0.685|GO:0051246_0.685|GO:0050790_0.683|GO:0006508_0.680|GO:0044092_0.677|GO:0043086_0.676|GO:0051248_0.676|GO:0051336_0.675|GO:0140096_0.674|GO:0098772_0.671|GO:0008233_0.670|GO:0010466_0.670|GO:0030162_0.670|GO:0045861_0.670|GO:0051346_0.670|GO:0052547_0.670|GO:0019899_0.668|GO:0030234_0.659|GO:0004857_0.654|GO:0140678_0.654|GO:0002020_0.650|GO:0004866_0.650|GO:0004867_0.650|GO:0004869_0.650|GO:0030414_0.650|GO:0061134_0.650|GO:0061135_0.650|GO:0005576_0.649|GO:0005615_0.598
|
IPR001919+25-116+|IPR008965+22-114+|IPR009009+191-262+|IPR012291+22-130+|IPR036908+164-272_165-270+
|
SM00637+25-116+
|
PF03330+191-262+Lytic_transglycolase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-288
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.976
|
29916.870
|
8.603
|
9.000
|
15.278
|
8.681
|
43.403
|
56.597
|
9.375
|
5.903
|
63.542
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
3780.646
|
7.418
|
3050.164
|
1004.711
|
109.225
|
262.238
|
45.700
|
2793.202
|
17992.703
|
318.552
|
7893.188
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.452
|
6.942
|
-1.492
|
-3.235
|
1.278
|
-2.511
|
3.314
|
-5.794
|
4.566
|
-3.994
|
— | — | — |