Hg_chrom3_TN10mRNA_4958
Organism: Heterodera glycines Gene Locus: chr3:3446749-3447855 Feature type: polypeptideProtein Sequence
Length: 206
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 1.355 | 0.883 | 1.674 | 0.243 | 0.996 | 1.098 | 0.243 | 1.187 | 0.918 | 1.618 | 1.428 | 1.214 | 1.4 | 0.297 | 1.803 | 0.637 | 0.736 | 0.373 | 0.714 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4692
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_13398;Hsc_gene_11134
|
— | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— | — | — |
36-64
|
0.896
|
1-24
|
0.991
|
1.000
|
0.000
|
0.000
|
0.159
|
0.072
|
0.007
|
0.442
|
0.086
|
0.111
|
0.170
|
0.005
|
0.138
|
0.947
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001110
|
2.000
|
3.000
|
Hsc_gene_11133.t1;Hsc_gene_13392.t1;Hsc_gene_13392.t2
|
Hsc_gene_11134.t1
|
— |
P86242.2 Papain inhibitor [Streptomyces mobaraensis]
|
ADL29728.1 expansin [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.939|GO:0005575_0.918|GO:0110165_0.918|GO:0065007_0.856|GO:0003674_0.848|GO:0050789_0.841|GO:0005488_0.789|GO:0008152_0.756|GO:0043170_0.756|GO:0005515_0.754|GO:0044238_0.750|GO:0048519_0.735|GO:0019222_0.732|GO:0060255_0.730|GO:0019538_0.720|GO:0080090_0.719|GO:0003824_0.692|GO:0009892_0.691|GO:0065009_0.691|GO:0010605_0.689|GO:0051246_0.689|GO:0050790_0.687|GO:0098772_0.682|GO:0006508_0.681|GO:0016787_0.681|GO:0044092_0.678|GO:0140096_0.678|GO:0051248_0.677|GO:0043086_0.676|GO:0051336_0.676|GO:0030162_0.673|GO:0045861_0.673|GO:0019899_0.672|GO:0008233_0.670|GO:0010466_0.670|GO:0051346_0.670|GO:0052547_0.670|GO:0030234_0.664|GO:0004857_0.656|GO:0140678_0.656|GO:0005576_0.652|GO:0002020_0.650|GO:0004866_0.650|GO:0004867_0.650|GO:0004869_0.650|GO:0030414_0.650|GO:0061134_0.650|GO:0061135_0.650|GO:0005615_0.609
|
IPR009009+109-180+|IPR036908+82-188_82-191+
|
— |
PF03330+109-180+Lytic_transglycolase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-206
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.961
|
21819.130
|
9.477
|
12.500
|
18.932
|
7.767
|
45.146
|
54.854
|
12.621
|
6.311
|
60.194
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
darkgreen
|
24987.824
|
24.401
|
1262.533
|
169.839
|
19.730
|
86.937
|
16.418
|
2810.096
|
143543.904
|
17.567
|
61528.855
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.463
|
2.663
|
-2.783
|
-3.133
|
2.150
|
-2.395
|
4.918
|
-7.280
|
12.786
|
-9.586
|
— | — | — |