Hg_chrom3_TN10mRNA_4962
Organism: Heterodera glycines Gene Locus: chr3:3467734-3470974 Feature type: polypeptideProtein Sequence
Length: 267
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.089 | 1.132 | 0.817 | 0.904 | 0.811 | 1.056 | 0.446 | 1.498 | 1.581 | 1.468 | 1.078 | 1.542 | 1.769 | 0.648 | 0.917 | 1.124 | 0.737 | 0.738 | 1.152 | 0.661 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4696
|
— | — |
1.000
|
— | — |
1.000
|
— |
1.000
|
2.000
|
— | — |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.637
|
0.361
|
0.028
|
0.392
|
0.056
|
0.063
|
0.027
|
0.193
|
0.139
|
0.151
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000198
|
1.000
|
10.000
|
Hsc_gene_11130.t1;Hsc_gene_11131.t1;Hsc_gene_11131.t2;Hsc_gene_11147.t1;Hsc_gene_11166.t1;Hsc_gene_20552.t2;Hsc_gene_5332.t1;Hsc_gene_616.t1;Hsc_gene_616.t2;Hsc_gene_616.t3
|
— | — | — |
KAI3415282.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.700|GO:0110165_0.700|GO:0008150_0.698|GO:0009987_0.628|GO:0005622_0.624|GO:0005737_0.595|GO:0032501_0.502
|
IPR000210+56-148+|IPR011333+51-149_55-145+|IPR011705+156-208+
|
— |
PF00651+56-148+BTB/POZ_domain|PF07707+156-208+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+45-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-267
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
30227.100
|
8.789
|
10.000
|
23.970
|
13.109
|
45.318
|
54.682
|
14.607
|
9.363
|
45.693
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
11.033
|
1.381
|
7.436
|
9.859
|
3.300
|
2.478
|
8.816
|
3.704
|
31.172
|
11.023
|
19.658
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.201
|
2.701
|
— |
-1.609
|
— |
1.833
|
— |
1.389
|
— | — | — | — | — |
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