Hg_chrom3_TN10mRNA_4963
Organism: Heterodera glycines Gene Locus: chr3:3471560-3472245 Feature type: polypeptideProtein Sequence
Length: 119
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.977 | 1.368 | 0.153 | 2.318 | 0.84 | 0.0 | 0.6 | 0.84 | 1.12 | 1.136 | 0.382 | 0.494 | 1.867 | 1.778 | 1.2 | 0.96 | 1.515 | 1.019 | 1.939 | 0.741 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4697
|
— | — |
2.111
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
3.000
|
5.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.226
|
0.067
|
0.086
|
0.268
|
0.520
|
0.448
|
0.246
|
0.023
|
0.485
|
0.266
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001185
|
3.000
|
2.000
|
Hsc_gene_11662.t1;Hsc_gene_25750.t1
|
Hsc_gene_16215.t1;Hsc_gene_19791.t1;Hsc_gene_25750.t1
|
— | — |
KAI3416475.1 hypothetical protein GPALN_006015 [Globodera pallida];KAI3420910.1 hypothetical protein GPALN_014538 [Globodera pallida]
|
MCI6100283
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-119
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
13174.300
|
8.085
|
4.000
|
15.966
|
13.445
|
37.815
|
62.185
|
10.084
|
5.882
|
58.824
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
203.483
|
0.157
|
0.582
|
0.375
|
0.311
|
0.251
|
0.000
|
1.619
|
0.000
|
889.002
|
508.001
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.