Hg_chrom3_TN10mRNA_4964
Organism: Heterodera glycines Gene Locus: chr3:3481364-3483114 Feature type: polypeptideProtein Sequence
Length: 546
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.596 | 0.937 | 1.199 | 0.126 | 2.137 | 1.55 | 0.611 | 1.282 | 1.384 | 1.188 | 1.804 | 0.862 | 0.661 | 0.528 | 1.346 | 0.497 | 0.991 | 0.444 | 0.704 | 1.131 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4698
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus|extracellular
|
— |
RKRK,KKYEGLQDDYKKIRE,RKKRFAALEYEAKKRDA
|
5-26
|
0.939
|
— | — | — | — |
0.164
|
— | — |
0.668
|
0.111
|
0.013
|
0.397
|
0.103
|
0.051
|
0.081
|
0.019
|
0.105
|
0.620
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000548
|
1.000
|
6.000
|
Hsc_gene_11722.t1;Hsc_gene_23112.t1;Hsc_gene_23117.t1;Hsc_gene_23118.t1;Hsc_gene_25548.t1;Hsc_gene_26447.t1
|
— | — | — |
CAK5078981.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
155-223;388-546
|
2.000
|
1-154;224-387
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
64239.360
|
6.755
|
2.000
|
40.476
|
9.707
|
60.073
|
39.927
|
21.062
|
19.414
|
36.447
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
6751.002
|
1.376
|
2.696
|
2.442
|
0.000
|
0.985
|
0.609
|
0.000
|
71.750
|
29478.781
|
16875.768
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-5.774
|
— | — | — | — |
-8.809
|
— |
-18.827
|
— | — |
No JSON data available for plots.