Hg_chrom3_TN10mRNA_4965
Organism: Heterodera glycines Gene Locus: chr3:3502434-3507952 Feature type: polypeptideProtein Sequence
Length: 588
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.989 | 1.622 | 0.773 | 0.938 | 1.105 | 1.221 | 0.729 | 0.935 | 1.134 | 1.241 | 1.056 | 1.601 | 1.842 | 0.752 | 0.625 | 1.02 | 0.809 | 0.67 | 0.654 | 0.95 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4699
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — |
40-73
|
0.998
|
— | — |
0.025
|
— | — |
0.137
|
0.179
|
0.039
|
0.134
|
0.204
|
0.237
|
0.178
|
0.049
|
0.203
|
0.927
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000199
|
9.000
|
2.000
|
Hsc_gene_15846.t1;Hsc_gene_15846.t2
|
Hsc_gene_11124.t1;Hsc_gene_11124.t2
|
— |
P48594.2 Serpin B4 [Homo sapiens]
|
KAI3412091.1 SERPIN [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.803|GO:0110165_0.798|GO:0008150_0.764|GO:0009987_0.629|GO:0003674_0.604|GO:0016020_0.569|GO:0005488_0.522|GO:0005622_0.520|GO:0065007_0.503
|
IPR000215+358-577+|IPR023796+365-586_367-579+|IPR036186+362-579+|IPR042178+348-518+|IPR042185+519-582+
|
SM00093+365-586+
|
PF00079+367-579+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+358-577+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-588
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
65805.980
|
6.562
|
0.500
|
22.789
|
12.585
|
46.599
|
53.401
|
11.905
|
10.884
|
48.980
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
236.151
|
2.587
|
6.275
|
5.576
|
4.976
|
77.203
|
10.217
|
124.037
|
0.000
|
946.586
|
540.906
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
3.975
|
-2.912
|
0.576
|
-3.463
|
-10.718
|
— |
-7.321
|
— | — |
No JSON data available for plots.