Hg_chrom3_TN10mRNA_4968
Organism: Heterodera glycines Gene Locus: chr3:3536418-3539233 Feature type: polypeptideProtein Sequence
Length: 466
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.023 | 1.647 | 0.663 | 0.296 | 1.431 | 0.88 | 0.715 | 0.751 | 1.431 | 1.421 | 1.073 | 1.389 | 1.907 | 0.949 | 0.569 | 0.92 | 0.809 | 0.813 | 0.495 | 0.505 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4702
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.254
|
0.172
|
0.065
|
0.653
|
0.166
|
0.130
|
0.167
|
0.062
|
0.267
|
0.725
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000199
|
9.000
|
2.000
|
Hsc_gene_15846.t1;Hsc_gene_15846.t2
|
— | — |
Q4R3G2.1 Serpin B6 [Macaca fascicularis]
|
KAF7634179.1 SERPIN domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.809|GO:0110165_0.804|GO:0008150_0.754|GO:0005622_0.641|GO:0003674_0.621|GO:0016020_0.617|GO:0005737_0.593|GO:0009987_0.565|GO:0043226_0.535|GO:0005488_0.530|GO:0071944_0.512
|
IPR000215+95-461+|IPR023796+101-463_104-461+|IPR036186+102-461+|IPR042178+111-403+|IPR042185+255-456+
|
SM00093+101-463+
|
PF00079+104-461+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+95-461+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-466
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
51705.240
|
5.140
|
-7.500
|
23.605
|
10.730
|
45.494
|
54.506
|
11.373
|
12.232
|
48.069
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
6.575
|
0.682
|
10.635
|
5.761
|
8.251
|
4.869
|
17.724
|
9.677
|
0.000
|
7.168
|
4.096
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.719
|
2.935
|
— | — | — |
1.872
|
— |
1.013
|
— | — | — | — | — |
No JSON data available for plots.