Hg_chrom3_TN10mRNA_4972
Organism: Heterodera glycines Gene Locus: chr3:3610784-3613259 Feature type: polypeptideProtein Sequence
Length: 335
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.007 | 1.597 | 0.543 | 0.103 | 1.592 | 0.612 | 0.711 | 1.045 | 1.791 | 1.412 | 1.402 | 1.405 | 2.322 | 0.918 | 0.244 | 0.853 | 0.783 | 0.588 | 0.23 | 0.527 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4706
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.224
|
0.155
|
0.076
|
0.564
|
0.187
|
0.200
|
0.281
|
0.053
|
0.276
|
0.790
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000199
|
9.000
|
2.000
|
Hsc_gene_15846.t1;Hsc_gene_15846.t2
|
Hsc_gene_658.t1
|
— |
Q4R3G2.1 Serpin B6 [Macaca fascicularis]
|
KAH7723002.1 ANISERP protein [Aphelenchus avenae]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.808|GO:0110165_0.799|GO:0008150_0.737|GO:0016020_0.603|GO:0005622_0.591|GO:0009987_0.579|GO:0003674_0.555|GO:0005737_0.546|GO:0043226_0.517
|
IPR000215+1-330+|IPR023796+1-330_1-332+|IPR036186+1-330+|IPR042178+1-273+|IPR042185+125-325+
|
SM00093+1-332+
|
PF00079+1-330+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+1-330+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-335
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
37367.100
|
5.693
|
-3.500
|
25.075
|
12.537
|
45.075
|
54.925
|
12.537
|
12.537
|
44.179
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
red
|
20.683
|
0.828
|
2.493
|
1.865
|
1.891
|
8.818
|
7.797
|
24.592
|
0.000
|
72.383
|
41.361
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
2.235
|
— |
1.384
|
-1.523
|
-6.901
|
— | — | — | — |
No JSON data available for plots.