Hg_chrom3_TN10mRNA_4974
Organism: Heterodera glycines Gene Locus: chr3:3616152-3618060 Feature type: polypeptideProtein Sequence
Length: 443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.735 | 1.102 | 0.985 | 0.856 | 1.317 | 0.984 | 0.941 | 1.016 | 1.455 | 0.732 | 1.676 | 1.992 | 1.129 | 0.738 | 0.691 | 0.709 | 0.814 | 0.752 | 2.605 | 0.996 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4708
|
— | — |
0.222
|
— | — |
1.000
|
— | — |
1.000
|
— | — | — |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.204
|
0.195
|
0.047
|
0.463
|
0.224
|
0.138
|
0.118
|
0.016
|
0.229
|
0.528
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000812
|
1.000
|
5.000
|
Hsc_gene_17490.t1;Hsc_gene_17490.t2;Hsc_gene_19293.t1;Hsc_gene_19293.t2;Hsc_gene_5302.t1
|
— | — |
P43508.1 Cathepsin B-like cysteine proteinase 4 [Caenorhabditis elegans]
|
KAI3418038.1 Trehalase [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991|GO:0006508|GO:0008234
|
GO:0005575_0.763|GO:0110165_0.761|GO:0008150_0.712|GO:0003674_0.663|GO:0005622_0.617|GO:0016020_0.555|GO:0005737_0.542|GO:0009987_0.522
|
IPR000169+181-192+|IPR000668+158-434_158-440_181-196_384-394_403-409+|IPR001661+5-67+|IPR008928+3-78+|IPR012341+1-88+|IPR013128+109-431+|IPR025660+382-392+|IPR038765+105-436+
|
SM00645+158-440+
|
PF00112+158-434+Papain_family_cysteine_protease|PF01204+5-67+Trehalase
|
— |
PTHR12411+109-431+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-443
|
6rni_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
50680.040
|
8.251
|
9.500
|
29.797
|
12.867
|
48.307
|
51.693
|
16.479
|
13.318
|
45.598
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
royalblue
|
3.110
|
0.000
|
0.555
|
0.376
|
1.446
|
6.345
|
1.926
|
22.864
|
1.382
|
0.000
|
0.592
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
2.140
|
— |
1.753
|
-3.426
|
— | — | — | — | — |
No JSON data available for plots.