Hg_chrom3_TN10mRNA_4977
Organism: Heterodera glycines Gene Locus: chr3:3637909-3639706 Feature type: polypeptideProtein Sequence
Length: 222
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.728 | 0.943 | 0.655 | 0.777 | 0.901 | 1.386 | 0.483 | 1.577 | 1.001 | 0.791 | 0.546 | 1.325 | 1.376 | 1.386 | 1.563 | 1.158 | 1.108 | 0.614 | 0.347 | 0.53 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4711
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.820
|
0.121
|
0.031
|
0.259
|
0.032
|
0.021
|
0.014
|
0.009
|
0.040
|
0.213
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000500
|
5.000
|
2.000
|
Hsc_gene_14974.t1;Hsc_gene_17302.t1
|
— | — | — | — |
No
|
-0.450
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+165-188_165-192_167-188_194-218+|IPR027756+66-219+|IPR036236+156-200+
|
SM00355+165-188_194-218+
|
— | — |
PTHR10032+66-219+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
65-154
|
2.000
|
1-64;155-222
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
24314.480
|
8.946
|
8.500
|
23.423
|
10.360
|
47.748
|
52.252
|
14.414
|
9.009
|
54.955
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
4.317
|
2.902
|
8.466
|
2.249
|
0.688
|
0.991
|
1.216
|
0.000
|
0.000
|
12.694
|
7.253
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.318
|
— |
-1.803
|
— | — | — | — |
4.133
|
— | — | — | — | — |
No JSON data available for plots.