SCN Proteipedia

Hg_chrom3_TN10mRNA_4983

Organism: Heterodera glycines Gene Locus: chr3:3703969-3715038 Feature type: polypeptide

Protein Sequence

Length: 1,224

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.921	1.159	0.683	0.958	0.98	0.88	0.652	1.757	1.507	1.634	0.656	1.538	1.271	0.597	1.301	1.097	0.938	0.904	0.817	0.577	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4716	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.989

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRRR,RRFFMKAADHRKRHN	—	—	2-62	0.715	—	—	0.000	—	—	0.159	0.064	0.020	0.192	0.363	0.292	0.446	0.067	0.664	0.008

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001186	2.000	3.000	Hsc_gene_11108.t1;Hsc_gene_11108.t2;Hsc_gene_17838.t1	Hsc_gene_11099.t1;Hsc_gene_11108.t1;Hsc_gene_11108.t2	—	O43306.2 Adenylate cyclase type 6 [Homo sapiens]	KAI3415325.1 Adenylate cyclase type 5 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004016\|GO:0005886\|GO:0006171\|GO:0009190\|GO:0016849\|GO:0035556	GO:0005575_0.882\|GO:0110165_0.882\|GO:0008150_0.844\|GO:0016020_0.793\|GO:0009987_0.785\|GO:0003674_0.745\|GO:0005886_0.738\|GO:0071944_0.738\|GO:0065007_0.707\|GO:0050789_0.682\|GO:0050896_0.666\|GO:0005622_0.655\|GO:0050794_0.633\|GO:0051716_0.588\|GO:0023052_0.532\|GO:0007154_0.530\|GO:0003824_0.522\|GO:0032501_0.504	IPR001054+405-604_442-603_449-621_451-578_964-1171_997-1187_1003-1186_1005-1142+\|IPR009398+651-713+\|IPR018297+1119-1142+\|IPR029787+398-631_439-604_990-1191_1000-1185+\|IPR032628+222-432+	SM00044+405-604_964-1171+	PF00211+442-603_997-1187+Adenylate_and_Guanylate_cyclase_catalytic_domain\|PF06327+651-713+Adenylate_cyclase,_conserved_domain\|PF16214+222-432+Adenylyl_cyclase_N-terminal_extracellular_and_transmembrane_region	G3DSA:3.30.70.1230:FF:000001+989-1189+Adenylate_cyclase\|G3DSA:3.30.70.1230:FF:000048+438-629+Phospholipid-transporting_ATPase,_putative	PTHR45627+224-1190+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-29;91-211;1185-1224	2.000	30-90;212-1184	8sl4_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.729	137153.680	8.259	34.500	23.856	11.111	45.670	54.330	14.216	9.641	47.386

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	3098.882	2020.256	2044.396	1071.692	613.784	1743.313	2161.129	3116.479	1540.042	7613.436	5010.553

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.212	-1.052	-0.824	-0.836	1.520	0.320	0.735	-0.386	—	—	—	—	—

No JSON data available for plots.

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