Hg_chrom3_TN10mRNA_4994
Organism: Heterodera glycines Gene Locus: chr3:3781421-3786346 Feature type: polypeptideProtein Sequence
Length: 501
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.044 | 0.975 | 0.472 | 0.826 | 0.599 | 0.768 | 1.022 | 0.699 | 2.218 | 1.834 | 0.514 | 2.113 | 1.386 | 0.614 | 1.018 | 0.884 | 0.851 | 0.998 | 1.842 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4727
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
11-48
|
0.921
|
— | — | — | — |
0.000
|
— | — |
0.095
|
0.335
|
0.027
|
0.164
|
0.222
|
0.397
|
0.298
|
0.017
|
0.515
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007467
|
1.000
|
1.000
|
Hsc_gene_25800.t1
|
Hsc_gene_25800.t1
|
— |
O34718.1 Major myo-inositol transporter IolT [Bacillus subtilis subsp. subtilis str. 168]
|
KAF7637130.1 MFS domain-containing protein [Meloidogyne graminicola]
|
WP_104182254
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.901|GO:0005575_0.859|GO:0110165_0.859|GO:0016020_0.813|GO:0009987_0.733|GO:0051179_0.705|GO:0006810_0.704|GO:0051234_0.704|GO:0003674_0.687|GO:0071944_0.663|GO:0005886_0.660|GO:0055085_0.648|GO:0005215_0.562|GO:0022857_0.562|GO:0005622_0.517|GO:0005737_0.510|GO:0043226_0.510
|
IPR003663+28-38_111-130_389-401+|IPR005828+25-465+|IPR005829+74-90_116-141+|IPR020846+20-454+|IPR036259+6-467_9-463+|IPR050814+12-477+
|
— |
PF00083+25-465+Sugar_(and_other)_transporter
|
— |
PTHR48020+12-477+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-501
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
54850.170
|
9.033
|
14.500
|
15.968
|
9.980
|
34.531
|
65.469
|
9.780
|
6.188
|
47.904
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
skyblue
|
246.231
|
10.365
|
23.860
|
14.806
|
23.122
|
1097.755
|
1181.485
|
176.940
|
0.000
|
129.137
|
73.793
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.966
|
— | — | — |
5.590
|
— |
-2.745
|
2.884
|
-7.829
|
4.745
|
— | — | — |
No JSON data available for plots.