Hg_chrom3_TN10mRNA_4996
Organism: Heterodera glycines Gene Locus: chr3:3808325-3810753 Feature type: polypeptideProtein Sequence
Length: 392
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.564 | 1.305 | 0.928 | 1.056 | 0.85 | 1.047 | 0.577 | 1.276 | 1.587 | 1.724 | 0.696 | 0.9 | 1.772 | 1.177 | 1.302 | 0.911 | 0.836 | 0.773 | 1.57 | 0.375 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4729
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
24-44
|
0.992
|
18-45
|
0.977
|
— | — |
0.000
|
— | — |
0.593
|
0.223
|
0.057
|
0.501
|
0.154
|
0.056
|
0.105
|
0.016
|
0.200
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001937
|
1.000
|
3.000
|
Hsc_gene_25810.t1;Hsc_gene_318.t1;Hsc_gene_318.t2
|
Hsc_gene_25810.t1
|
— | — |
KAI3421912.1 hypothetical protein GPALN_012454 [Globodera pallida]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
389-392
|
1.000
|
1-388
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
44828.950
|
7.935
|
8.000
|
23.724
|
12.245
|
44.898
|
55.102
|
13.520
|
10.204
|
46.173
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
steelblue
|
969.169
|
1047.392
|
2078.354
|
1209.857
|
932.641
|
911.628
|
504.239
|
1127.223
|
1082.203
|
499.212
|
749.065
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
— |
-0.672
|
-0.408
|
— |
-0.846
|
— |
-1.019
|
— | — | — | — | — |
No JSON data available for plots.